Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30068
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    28   1.1  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   3.4  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.0  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.9  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 267 EIGPSGGGTRGPRVHA-VQDVVEPARHLRAVLLEPVDAECPYGSREAE 127
           E G +   ++G ++ + + D+ E ++HL  VLLEP      YG  + E
Sbjct: 8   EKGVNTSDSKGSQIESSISDLREKSQHLFGVLLEPQVPVIQYGLNQLE 55


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 86  RPWPSVRRGSTRRFSASREP 145
           RPW  + R  + R+SAS EP
Sbjct: 15  RPWTIINRIQSERYSASYEP 34


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 400 DARQYAFEGSSMFTIPMEIVNIICESLLNFTTTTFVVC*MLMIDGFLLCLWPAAMY 567
           + + Y++ G++ F +   +       LL     +  +C  L+I GFLLC+   A Y
Sbjct: 98  EGQMYSWSGTA-FYLGYLVFEFPASLLLQRFPLSKTLCVFLVIWGFLLCMTSVANY 152


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 219 VQDVVEPARHLRAVLLEPVDAECPY 145
           V +++EP+  L A+L++P+   C Y
Sbjct: 340 VANLLEPSYELPALLIKPIQRICKY 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,034
Number of Sequences: 5004
Number of extensions: 40732
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)