Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30065
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    89   4e-19
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    88   7e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    85   8e-18
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.3  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.0  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   4.0  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.3  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.3  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   7.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.2  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 38/63 (60%), Positives = 56/63 (88%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 245 KLS 253
           KLS
Sbjct: 61  KLS 63


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 88.2 bits (209), Expect = 7e-19
 Identities = 37/63 (58%), Positives = 55/63 (87%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 84.6 bits (200), Expect = 8e-18
 Identities = 35/63 (55%), Positives = 55/63 (87%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 201 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 73
           SSV T LS S S+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 25.4 bits (53), Expect = 5.3
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = -3

Query: 273 SASYWHYDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 94
           S+S     SF+ PA+ S  TSL  SS     S S S +  +   + S+S+A+    P S+
Sbjct: 62  SSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSS 117

Query: 93  ASKYA 79
           +S +A
Sbjct: 118 SSSHA 122


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 216 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 82
           + L + S  T +S S   S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 62   KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 223
            K+R +    +  L  ++T  +   E+   + G+E+ G+K K ++ E  NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 216 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 73
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 231 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 88
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 60  KKCVTWPRIYWLCWV 104
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 60  KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 206
           KK + + +I W  WV R   +P      S PS S      L   SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 258 HYDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 82
           H+    +P + + S++LP    +  L+     S+      F  SA  G +LP  +A+ Y
Sbjct: 226 HHQCNEQPPSSTFSSTLPCIQALKELASKYDMSLAELALSFILSAGRGRILPIPSATSY 284


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 249 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 91
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 398 TKLYKSTRRWSLFQFMF 448
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 261 WHYDSFSRPAAISCSTSLPLSSVITFLSF 175
           W Y  F      S STS+P+ SV+  L F
Sbjct: 218 WKYADFFHNVWSSSSTSVPILSVVLALFF 246


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 237 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 73
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,600,556
Number of Sequences: 5004
Number of extensions: 24035
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)