Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30055
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 58 1e-09
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 48 1e-06
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 40 3e-04
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 37 0.003
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 35 0.016
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 33 0.063
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 33 0.063
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 32 0.11
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 31 0.25
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 30 0.33
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 30 0.44
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 29 1.0
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 27 2.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 2.4
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.1
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 26 5.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 7.2
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 9.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.5
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +2
Query: 356 VPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQVDTSRHT*N 535
+P+S++ + L + K +Q+ P +GF V L+ + ++FEWEV I GP DTLY+ T +
Sbjct: 1 MPSSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLS 60
Query: 536 SPLTTRIHHHPLGFLTKVW 592
P + + F T++W
Sbjct: 61 FPQDYPLMPPKMKFTTEIW 79
Score = 39.5 bits (88), Expect = 5e-04
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3
Query: 594 HPNVYENGDLCISILHPP 647
HPNV+ NG++CISILHPP
Sbjct: 80 HPNVHPNGEVCISILHPP 97
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +2
Query: 344 MSNTVPTSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQVDTSR 523
M++ P+SS R L EY L+E P+ RV L+ +DNLF W GP D++Y
Sbjct: 1 MASASPSSS--RRLTKEYSDLREHPIPDIRVNLV-DDNLFHWACTALGPSDSVYAGGKFH 57
Query: 524 HT*NSPLTTRIHHHPLGFLTKVW 592
+ PL + F T+++
Sbjct: 58 FSLKFPLDYPFQPPTIEFTTRIY 80
Score = 30.7 bits (66), Expect = 0.25
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 505 SSGYFKAHMKFPPDYPYSPPSI 570
+ G F +KFP DYP+ PP+I
Sbjct: 52 AGGKFHFSLKFPLDYPFQPPTI 73
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +2
Query: 362 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQ 508
+ A + L EY +LQ+ PVE K E N+ EW I GPPDT Y+
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATE-NILEWHYIITGPPDTPYE 50
Score = 34.3 bits (75), Expect = 0.021
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 511 GYFKAHMKFPPDYPYSPPSIRVFN*SLGIQMYMKTEIFAYRFSTRPWD 654
G + + FPPDYP+ PP+IR+ S Q + + F + W+
Sbjct: 52 GQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWN 99
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 594 HPNVYENGDLCISILHPPVG*SSVWRTAPANVGNPTQSV 710
HPNVY++G +CISILH P +++ ++ + +P QSV
Sbjct: 80 HPNVYKDGTVCISILHAPGDDPNMYESS-SERWSPVQSV 117
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 371 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQ 508
ALR L EYK L E +G ED+ F W+ I GP T ++
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFE 51
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 493 GYTLSSGYFKAHMKFPPDYPYSPPSIR 573
G G + A +KFP DYP PP+++
Sbjct: 47 GTPFEGGLYPATLKFPSDYPLGPPTLK 73
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 34.7 bits (76), Expect = 0.016
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 362 TSSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLYQVDT 517
+++A R L ++K +Q++P G + DN+ W I GP DT ++ T
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVS-DNVMLWNAVIIGPADTPFEDGT 52
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 594 HPNVYENGDLCISIL 638
HPNVY NG+LC+ IL
Sbjct: 78 HPNVYANGELCLDIL 92
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 32.7 bits (71), Expect = 0.063
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 588 SGHPNVYENGDLCISILHPPVG*SSVWRTAPANVGNPTQSVRNRYSPSGNLNP-SKEPEH 764
S PN+Y+ + + P+ V+ A+ NP ++ R +PSG+L P S P H
Sbjct: 312 SHRPNIYQTLKEIMEMQGTPLKLPDVYGGVNASTYNPPRAPLQR-TPSGSLTPLSSRPAH 370
Query: 765 LSVPGERSMPTV 800
S+P +PTV
Sbjct: 371 TSLP---PIPTV 379
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 32.7 bits (71), Expect = 0.063
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 517 FKAHMKFPPDYPYSPPSI 570
FK M FP +YPYSPP+I
Sbjct: 78 FKISMSFPANYPYSPPTI 95
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 365 SSALRALALEYKSLQEEPVEGFRV-KLLGEDNLFEWEVAIFGPPDTLYQ 508
+S+++ L EY S Q + G + K + + ++F W+ I GP +T Y+
Sbjct: 2 NSSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYE 50
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 371 ALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGPPDTLY 505
AL+ + E L ++P +G+D LF W+ I GP D+ Y
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGDD-LFHWQATIMGPADSPY 45
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 505 SSGYFKAHMKFPPDYPYSPPSI 570
+ G F + FP DYP+ PP +
Sbjct: 46 AGGVFFLSIHFPTDYPFKPPKV 67
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 594 HPNVYENGDLCISIL 638
HPN+ NG +C+ IL
Sbjct: 75 HPNINSNGSICLDIL 89
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 505 SSGYFKAHMKFPPDYPYSPPSIRVFN 582
S G +K H++ P +YP+ PSI N
Sbjct: 45 SGGIWKVHVELPSEYPWKSPSIGFVN 70
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 29.9 bits (64), Expect = 0.44
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 594 HPNVYENGDLCISILHPPVG 653
HPNVY +G +C+SIL+ G
Sbjct: 83 HPNVYPSGTVCLSILNEEEG 102
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 511 GYFKAHMKFPPDYPYSPPSIR 573
G +K M FP +YP PP R
Sbjct: 56 GLYKLTMAFPEEYPTRPPKCR 76
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 493 GYTLSSGYFKAHMKFPPDYPYSPPSI 570
G GYF ++ P DYP+ PP +
Sbjct: 45 GTPYEGGYFVVDIEIPIDYPFRPPKM 70
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 413 EPVEGFRVKLLGEDNLFEWEVAIFGPP 493
E ++G +K + +WEVAIFG P
Sbjct: 186 EEIDGIGMKTVANKLNADWEVAIFGEP 212
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 501 SVSGGPKIATSHSNRLSSPSNLTRKPSTGSSCRLLYSNAKA 379
S S P + S +R SS +LTR+PS S L N +A
Sbjct: 85 STSPFPYLKGSFDDRFSSTHSLTRQPSPRSPLTPLKGNTRA 125
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 344 MSNTVPTS-SALRALALEYKSLQEEPVEGFR 433
M ++VP + ++L E+ +L E+P+EGFR
Sbjct: 22 MFHSVPQNKNSLSVCVAEFTALSEKPLEGFR 52
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 493 GYTLSSGYFKAHMKFPPDYPYSPPSIRVFN 582
GY G FK ++ +YP+ PP ++ N
Sbjct: 63 GY-YKGGKFKFRIQIDDNYPHDPPKVKCLN 91
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 489 GPKIATSHSNRLSSPSN--LTRKPST 418
GP+ TS SN +SP+N T KPST
Sbjct: 230 GPRPTTSASNTNTSPANGAPTNKPST 255
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 612 FHIHLDAQTLVKNPNGWW 559
FH D Q ++KN +G+W
Sbjct: 475 FHKKFDVQNVLKNDSGYW 492
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 627 ISILHPPVG*SSVWRTAPANVGNPTQSVRNRYSP---SG-NLNPSKEPEH 764
+S L PP +S+ +APA P V Y P SG + P ++P H
Sbjct: 904 VSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSH 953
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -2
Query: 331 IYSTFTTYLNKII*TYHFGTLYAVHVPPGISTRHNNNELEILVN 200
+ TF + N+ I TYH H P IS N N L N
Sbjct: 526 VEGTFKAFKNRTIHTYHVEGAGGGHAPDIISLVQNPNILPSSTN 569
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,998
Number of Sequences: 5004
Number of extensions: 84815
Number of successful extensions: 258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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