Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00016
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    64   1e-11
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    64   1e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    60   3e-10
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   1.6  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   1.6  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   1.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   1.6  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.7  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG +++
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLK 56



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 29/56 (51%), Positives = 42/56 (75%)
 Frame = +3

Query: 87  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG +++
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLK 56



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 26/56 (46%), Positives = 41/56 (73%)
 Frame = +3

Query: 87  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVR 254
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG +++
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLK 56



 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 99  SDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 385 SDDDMGFGLFD 417
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 51  GLRQLARSKLKMVSKAELACVYSAL 125
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,026
Number of Sequences: 5004
Number of extensions: 29436
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)