Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0127
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 95 6e-21
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 95 6e-21
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 2.3
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.1
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 3.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.1
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 24 9.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 9.4
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 94.7 bits (225), Expect = 6e-21
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3
Query: 255 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWR 395
SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM APTK WR
Sbjct: 63 SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWR 109
Score = 81.0 bits (191), Expect = 8e-17
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +1
Query: 67 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 246
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 247 HQT 255
HQT
Sbjct: 60 HQT 62
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 94.7 bits (225), Expect = 6e-21
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3
Query: 255 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWR 395
SAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM APTK WR
Sbjct: 63 SAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWR 109
Score = 81.8 bits (193), Expect = 4e-17
Identities = 38/63 (60%), Positives = 47/63 (74%)
Frame = +1
Query: 67 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 246
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 247 HQT 255
HQT
Sbjct: 60 HQT 62
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 128 APCTVSLFSEYTDTKGRATDRLISLL 51
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 66 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 176
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 141 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 236
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 7.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 162 HTSGPGQ*CSRFYVQELEAALLREQGGWSPNSAESWGTGRAVARIPRVRG 311
HT G GQ V EL+ + P +AE W GR + R +RG
Sbjct: 651 HTDGRGQLSLLNIVVELKK--VSNHPYLFPGAAEKWMMGRKMTREDTLRG 698
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 117 GAGCSQAPPVRIQGAHTSGPGQ*CSRFYVQELE 215
G G S PP I+G S + RF+ + LE
Sbjct: 131 GMGNSSRPPFDIKGQTASEKVEETERFFTESLE 163
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 364 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSA 257
PP P P P + VPP +TA PVP SA
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP---PSTAPPVPTPSA 1224
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = -3
Query: 399 APARASWGRTYV---HHDTCYRRHPDRTYGYHHHGHAE 295
APAR S R+ H+T G HHH H E
Sbjct: 1276 APARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNE 1313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,674
Number of Sequences: 5004
Number of extensions: 34476
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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