Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0093
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 1.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 3.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 26 3.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 3.5
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 25 4.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.0
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 269 LSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSG 370
LS FPSD T +ER+ R GTAVF+S+G
Sbjct: 1376 LSHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 3.5
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = -1
Query: 435 SYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSN 256
++N+ R V ++ PELL+ P + L + R A N S +
Sbjct: 141 AFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSELLTITNIRDEHRTAPEFNQLSTVMS 200
Query: 255 AIAVLIWVWRLTDHLTTASNGSDSS 181
I++L WV L+ S DSS
Sbjct: 201 GISILGWVTVEPTPLSFMSEMKDSS 225
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 480 SVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPP 367
S+ LTRK +NT R+ + PV ++ + +S PP
Sbjct: 228 SIMLTRKLENTTRSDQGYLASPVPFLNGNEPANSGLPP 265
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 425 LSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEE 291
+S Q N +T NS +++ AE SST + PY S +
Sbjct: 155 ISSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 3.5
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 462 KTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNAR-STSILVRGAS 286
K N VR +S +RP + I+Q P P L A R A ++ R S+SIL R A
Sbjct: 385 KAANIVRPSSSINRRPPSSINQRP------PSNLRILAPSRSRATIHERPSSSILHRHAH 438
Query: 285 LGNGDSVTSNAIA 247
S ++ +A
Sbjct: 439 SLTSSSFSTKTLA 451
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 480 SVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPP 367
S+ LTRK +N VR+ + PV ++ D E PP
Sbjct: 301 SMMLTRKYENMVRSDMHYSAVPVPFLNGDEPRDYELPP 338
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 376 TASRALEDRGATTRSEAQRAL 314
+AS LEDR A ++EAQR +
Sbjct: 1221 SASSNLEDRAARIKAEAQRRM 1241
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 229 PYPNENCDGVXSHAVSVPERRSSDEYGRRARVELRSASWHRGLQELWRLF 378
P+ +E D A +R+ + + RR +E SW RG+ + LF
Sbjct: 1398 PWESEFIDSQRVWAEYAMKRQEALQQNRRLTLEDLEDSWDRGIPRINTLF 1447
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 13 SSGTSSIPKFHSSLQDLKQPSLQEPR 90
S T+S K H S LK+ S EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,118
Number of Sequences: 5004
Number of extensions: 29882
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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