Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0092
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   1.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.1  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   4.8  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   8.3  

>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 241 APACIAGPTTQN-DFQLLDEEYIRETLSC 324
           A AC   PT  + DF LLD EYI   L+C
Sbjct: 320 AIACGLIPTPSSLDFYLLDREYIPNELTC 348


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 312 FPDVLLVEQLEIILSCGPSYAG 247
           FP  L+  Q+ II S GPSY+G
Sbjct: 585 FPVPLVSSQIAIISSLGPSYSG 606


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 359 SPYNLSDDTRRL*AFQLSQKVLD*PTNIGRLLGSRRINICAE 484
           +PYN+S+ T RL    LS + +D        +  +R+ +C E
Sbjct: 250 APYNISEPTSRLALDALSPQSIDKMHTYRDAIIQQRVRLCKE 291


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 592 KGHFVYIIRKL*YVYYFXIIXQF 524
           +GH + I  ++ YVYY  I+ QF
Sbjct: 166 RGHGLTISSQIRYVYYIEILKQF 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,706
Number of Sequences: 5004
Number of extensions: 49486
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)