Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0085
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.38 
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   4.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.6  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   4.6  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   8.1  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    25   8.1  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 396 LPPLNLDML-PIGNIVNIFSKLLY 464
           +P LN++   P  NI+N F K+LY
Sbjct: 512 IPKLNVENFGPTANIINCFVKVLY 535


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 PFDNSVQIIDAKKGXNVLKRVQLPPLNLDMLPIG-NIVNIFSKLLY 464
           PF ++   ID       L  V   P+N+DM  +G   V+IF   LY
Sbjct: 838 PFFSNKLFIDQDFILGFLDLVASEPINVDMTDVGTQFVHIFHASLY 883


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +3

Query: 324 YFPFDNSVQIIDAKKGXNVLKRVQLPPLN---LDMLPIGNIVNIFSKLLY 464
           YF   N   I   KKG +V     +PPL     D+ P   + N+ +  +Y
Sbjct: 244 YFRAFNDDDIAFLKKGFDVSSSYNIPPLGERYYDLTPEDEMTNLCANSIY 293


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 466 IYNNLENILTILPIGNISKFNGGSCTRF 383
           +++N+ENI TI+ +G++ +     CT +
Sbjct: 355 VWDNVENIGTIVMLGSLFEAGREMCTAY 382


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 472 SWIYNNLENILTILPIGNISKFNGGS 395
           S  Y    NILT  PI   +K  GGS
Sbjct: 19  SLAYKKASNILTFPPIRTSTKHGGGS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,215
Number of Sequences: 5004
Number of extensions: 31303
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)