Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0070
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.51 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.6  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   8.3  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 95  VQTTVKKIHAYSHHLFALRTL 157
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 74  RTVLWYVVQTTV-----KKIHAYSHHLFAL 148
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 38  IFIMLVACVASQRTVLWYVVQTTVKK--IHAYSHHLFAL 148
           +F M  ACV    T LW   + T++K  IHA S   F +
Sbjct: 158 LFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLI 196


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 391 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMHLR 287
           +I + G + S+ +LY P  +ND  S+V    M  R
Sbjct: 230 LICKGGTNISLKTLYMPLLKNDLGSIVDIATMSTR 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,522
Number of Sequences: 5004
Number of extensions: 45898
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)