Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0045
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.6  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   4.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.3  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 126  NSLQRESKGHSRSSQYRSLNKDDVFY 49
            N+  +ES+  + +  Y SLN+DD+FY
Sbjct: 2577 NAKVQESRADAVAELYASLNEDDMFY 2602


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 269 HTTEFKADFLSQFDYKTWKNNRRLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSL 448
           HTT F  DF S  D   W+ ++ +K    R  N  D  +K +V  F +   SS +V   +
Sbjct: 97  HTTYFYIDFCSTIDSIKWRMHQLVKTVEDRMRNDFD--SKGYVCPFCNKKFSSLDVLSLV 154

Query: 449 LDYG 460
            + G
Sbjct: 155 TNEG 158


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 111 PFEDCWLRDHCRCSQCY 161
           P ++CWL   C+   CY
Sbjct: 366 PEDECWLSTDCKVPTCY 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,555
Number of Sequences: 5004
Number of extensions: 46607
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)