Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0004
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   2.1  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   3.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   6.3  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 353 KYGDRVXTMXLPRASAPPGPTPQRDYRPVPRTPILMS 463
           K  D       PR S  PG +P +  R + R P + S
Sbjct: 247 KLDDSTDNSSKPRTSLQPGESPMKSSRDISRKPSMAS 283


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 275 NSIMGIXVENIXPHIHWXPQLID 343
           N++M I   N  PH +W P  +D
Sbjct: 355 NNVMNIRQFNCSPHPYWLPNFMD 377


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 386  PRASAPPGPTPQRDYRPVP 442
            P ++APP PTP     PVP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVP 1230


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 383 LPRASAPPGPTPQRDYRPVPRTP 451
           LPRA+ P  P PQ  Y+ +P  P
Sbjct: 113 LPRATIPVKPEPQPQYK-IPAAP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,580
Number of Sequences: 5004
Number of extensions: 21626
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)