BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0250.Seq (460 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 26 3.2 SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 4.2 SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.6 SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 25 7.3 SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3 SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 24 9.7 SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 24 9.7 >SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 25.8 bits (54), Expect = 3.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 309 ELYPDFGAVMHVLRKKPIDRSPRSKW 232 EL PD+ M VL K+ R RS+W Sbjct: 186 ELLPDYSPDMSVLDKRSHPRPLRSEW 211 >SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces pombe|chr 1|||Manual Length = 312 Score = 25.4 bits (53), Expect = 4.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 338 VDDFRSWRGVVLGRAASCCDLLRLS 412 VD FR W + SC DLL+LS Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96 >SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1337 Score = 25.0 bits (52), Expect = 5.6 Identities = 24/84 (28%), Positives = 33/84 (39%) Frame = -2 Query: 435 NYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPI 256 N S + S SQH L P E+KS D S PR + P F + ++ RK Sbjct: 131 NPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRK----PSFFSKSNLKRKYRY 185 Query: 255 DRSPRSKWASTSRXAF*MRNATSK 184 ++P W F +N K Sbjct: 186 LKNP-DAWNLPPSLQFIPKNLNRK 208 >SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 483 Score = 24.6 bits (51), Expect = 7.3 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 294 SPDITQFDVGA-RNSL*TTSVPGGVLCSVEQRRAAI 398 SP +T ++GA + + PG VLC +E +A I Sbjct: 62 SPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQI 97 >SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 24.6 bits (51), Expect = 7.3 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -2 Query: 408 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDF--GAVMHVLRKKPIDRSPRSK 235 S + SQHD A + + KSST + Y +F G ++ L+ D P +K Sbjct: 126 SNSSSQHDKAFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQSVNSLKPNSGDEVPSTK 185 Query: 234 WASTS 220 +++S Sbjct: 186 SSTSS 190 >SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 783 Score = 24.2 bits (50), Expect = 9.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 420 GAGLSLNRSQHDAALPSTTPRQERKSS 340 G LS+ S+ DAALP+ P E + S Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453 >SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 348 Score = 24.2 bits (50), Expect = 9.7 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 248 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 120 L P+G R VS + +++K+ C P SRG TV PD+ Sbjct: 6 LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,725,154 Number of Sequences: 5004 Number of extensions: 30577 Number of successful extensions: 85 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 85 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 172312850 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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