BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0241.Seq (534 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 29 0.58 SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 7.1 SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf... 25 7.1 SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 9.4 SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 9.4 >SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 526 Score = 28.7 bits (61), Expect = 0.58 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -2 Query: 179 ICEETIRLGGSMVHHHGIG---KHRVXWSKLEHGSAWALLEGLKKQFDPNGIM 30 + E R GS+ HG+G K V +SK + L++ LK FDPNGIM Sbjct: 470 VYEWVSRHRGSISAEHGLGLLKKPFVGYSKSKE--MIHLMKTLKNVFDPNGIM 520 >SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 226 Score = 25.0 bits (52), Expect = 7.1 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -2 Query: 260 VLVYDYNVVDCKPEEEIDKYHXPLNKII 177 +L Y + CK EE +K+ PL+K + Sbjct: 143 ILTAWYQLYSCKKEESSNKFLCPLSKYL 170 >SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf3|Schizosaccharomyces pombe|chr 1|||Manual Length = 155 Score = 25.0 bits (52), Expect = 7.1 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 221 EEEIDKYHXPLNKIICEETIRLGG 150 E +ID+ + L +I C +T+R G Sbjct: 3 ETQIDELYFSLMRIFCSQTLRAAG 26 >SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 874 Score = 24.6 bits (51), Expect = 9.4 Identities = 11/55 (20%), Positives = 27/55 (49%) Frame = -3 Query: 415 MGFTTEVSGCWSCIHEIYESVINRIRTEFPXADXITMXGGHSSHSYQNGTNMYLS 251 MG ++ W+C+H++ E + ++ +T+ H+S ++ N ++S Sbjct: 673 MGTKRWLTKIWNCVHQLLER--EKKMSDAMRQTKLTIVDDHNSRKLESQYNEFIS 725 >SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 256 Score = 24.6 bits (51), Expect = 9.4 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -2 Query: 281 LSERHQHVLVYDYNVVDCKPEEEIDKYHXPLNKI 180 L+ H L+ ++ + PEEE +K H L++I Sbjct: 193 LTVEELHTLMNSFSFIYKLPEEEKEKVHAELDEI 226 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,883,060 Number of Sequences: 5004 Number of extensions: 32645 Number of successful extensions: 83 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 83 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 220420454 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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