BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0239.Seq (811 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 32 0.11 SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 31 0.19 SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 28 1.4 SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5 >SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 309 Score = 31.9 bits (69), Expect = 0.11 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +2 Query: 362 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESDLKGDTSDT 514 DA++ + +E I E T +Y IRT+S Y+ Y S D D +DT Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADT 265 >SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|Schizosaccharomyces pombe|chr 1|||Manual Length = 832 Score = 31.1 bits (67), Expect = 0.19 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = +2 Query: 455 YEQLYGKS--LESDLKGDTSDTSRDCACRCAWPIAMKTRASXKAQLKPMLKHWPPLVK 622 YE K+ L+SD+ G D++RD A PIA ++ + + + W P +K Sbjct: 50 YENFVSKNHVLQSDINGKKRDSNRDKAAVVTAPIASTHESNYEESVSKFKESWLPQLK 107 >SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 1.4 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 549 IGHAQRHAQSLEVSDVSPFKSDSR 478 +G A H + LE+ V+ FK DSR Sbjct: 269 LGGAMEHLERLEIKSVASFKGDSR 292 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 26.2 bits (55), Expect = 5.5 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = +1 Query: 451 ILRTTVRQEPGIGLKRRHVGH 513 ++ T + +PG LK+RH+G+ Sbjct: 1171 MMPTNIEHDPGCTLKKRHIGN 1191 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,741,339 Number of Sequences: 5004 Number of extensions: 48654 Number of successful extensions: 138 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 138 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 394431430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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