BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0236.Seq (900 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 105 6e-24 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 29 0.90 SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 4.8 SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 26 8.4 SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 8.4 >SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces pombe|chr 3|||Manual Length = 285 Score = 105 bits (253), Expect = 6e-24 Identities = 47/81 (58%), Positives = 68/81 (83%) Frame = +2 Query: 2 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 181 ++L GL +GGQQ+ K ++ ++ AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIP Sbjct: 121 FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIP 180 Query: 182 RLERTLAYIISELDELEREEF 244 RLE T+ YI SEL+ELERE+F Sbjct: 181 RLENTIKYIESELEELEREDF 201 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 29.1 bits (62), Expect = 0.90 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +1 Query: 484 PVPNSPYSGRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 648 P+P P ++ H + + +L N I+L ++PLSP A+ P+PI L Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229 Query: 649 PNSCA 663 +S A Sbjct: 230 YSSDA 234 >SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 617 Score = 26.6 bits (56), Expect = 4.8 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = +1 Query: 19 GPWWA-AACKAEEELPERCKAFGRVSFTADFI 111 G WW +C EEE+ KAFG T + I Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335 >SPBC119.15 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 25.8 bits (54), Expect = 8.4 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +2 Query: 89 LASLQTSFVTLDEVIKITNRRVNAIEHVII 178 + SL D+V+KI +R ++H++I Sbjct: 81 MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110 >SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1155 Score = 25.8 bits (54), Expect = 8.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 405 VLRLDLEQQVLIALVQQVGDPTAQVVAGSQESGFF 301 V+ LD EQQ ++ +PT+ + SQ + FF Sbjct: 88 VIVLDSEQQTVLLQSNFTSNPTSLEIFSSQNTSFF 122 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,217,752 Number of Sequences: 5004 Number of extensions: 58713 Number of successful extensions: 157 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 151 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 454497130 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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