BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0235.Seq (823 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 83 5e-17 SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 29 0.80 SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 27 4.3 SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 7.4 SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.4 SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 7.4 SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 25 9.8 SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.8 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 83.0 bits (196), Expect = 5e-17 Identities = 45/85 (52%), Positives = 58/85 (68%) Frame = -2 Query: 264 KAETEADKNDKAVKDLVILLYETALLSSGFTLDEPQVHASRIYRMIKLGLGIDEDEPIQV 85 K E D++VKDL +LYETALLSSGFTLD+P +A RI R+I LGL IDE+E + Sbjct: 623 KKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLISLGLSIDEEEEAPI 682 Query: 84 EEPASGDVPPLEGDADDASRMEEVD 10 EE ++ V E +A+ S+MEEVD Sbjct: 683 EEISTESV-AAENNAE--SKMEEVD 704 >SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces pombe|chr 3|||Manual Length = 262 Score = 29.1 bits (62), Expect = 0.80 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 93 IQVEEPASGDVPPLEGDADDASRMEEVD 10 IQ + P D PP++ DAD+ EE D Sbjct: 157 IQWDNPDFDDAPPVQPDADEEEEEEEAD 184 >SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 411 Score = 26.6 bits (56), Expect = 4.3 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 49 LQWRHISRSRLFNLNRLIFINTKTQFDHSIDTGSMDL 159 L+W I RS N+N ++ Q HS+DT S+D+ Sbjct: 272 LEWS-IQRSNDSNINCSTCLDVDCQHLHSLDTHSLDI 307 >SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 2052 Score = 25.8 bits (54), Expect = 7.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 554 VKSAHFLTNRPKSAKSLINQKNRP 625 VK FLTN + SL+ Q NRP Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698 >SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 25.8 bits (54), Expect = 7.4 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = -3 Query: 302 LEINPDHSIVETLRQKRKPTRMTKLLRILLSYCMKLP 192 LE+N IV TLRQ+ P + K L +L P Sbjct: 142 LEMNIMPKIVNTLRQENHPVTLLKKLFLLSKSVQSFP 178 >SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 926 Score = 25.8 bits (54), Expect = 7.4 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 Query: 501 PFXCATVGKGDRCGPLRYYASWRKGDV 421 P C V G R GP Y +W+ DV Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418 >SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation complex subunit Cdc45|Schizosaccharomyces pombe|chr 1|||Manual Length = 638 Score = 25.4 bits (53), Expect = 9.8 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Frame = +1 Query: 13 NLLHARCIIGITLQ-WRHISRSRLFNLNR---LIFINTKTQFDHSIDTGSMDLGLIKREA 180 ++LH+ +G L W R RL L L + K + H +MDL + + Sbjct: 326 SMLHS-AYVGSRLHIWSEEGRKRLHKLLAKMGLSLVECKQTYIHM----NMDLKKTLKSS 380 Query: 181 RRQQGSFIQ*DNKILNSFVILVGFRFCLNVSTIE--*SGLISKGGPG 315 ++ F D+ I +SF GF+ L+ S + S L+ G G Sbjct: 381 LKRFAPFYGLDDVIFHSFTRTYGFKCTLSASDVSYAISALLEMGNTG 427 >SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 270 Score = 25.4 bits (53), Expect = 9.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = -3 Query: 224 RILLSYCMKLPCCLLASRLMSPKSML---PVSIE*SNWVLVLMKMSRFRLKSL 75 +IL+ + PC +RL PK +L VS++ L ++SR L S+ Sbjct: 83 KILIKWIRTTPCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHSV 135 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,370,175 Number of Sequences: 5004 Number of extensions: 69733 Number of successful extensions: 145 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 402440190 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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