BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0233.Seq (793 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.25 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.58 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3 SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 28 1.3 SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.3 SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.8 SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 28 1.8 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.1 SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 3.1 SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.4 SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.4 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 5.4 SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 7.1 SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 7.1 SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 26 7.1 SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 9.4 >SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 867 Score = 30.7 bits (66), Expect = 0.25 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 646 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 515 +P+K+ PAK ++ + A SPA NG N+AS Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEAS 156 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 29.5 bits (63), Expect = 0.58 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -1 Query: 703 RRQEGXAPWGSNPQLSPXESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEES 527 R +P PQ SP E+ + + + +ESN K +GT+ + +P NG+ E + Sbjct: 166 RNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGNEEVN 224 Query: 526 N 524 N Sbjct: 225 N 225 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 28.3 bits (60), Expect = 1.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -1 Query: 634 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMPQKRK 488 K P+ K + S+ +NG+D DS + N SN +EN Q+RK Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRK 1007 >SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 679 Score = 28.3 bits (60), Expect = 1.3 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -1 Query: 535 EESNDASENVMPQKRKRLV*RGNLWLLM 452 E+S DASE V +K +L+ RG W+L+ Sbjct: 98 EQSGDASERVHARKVLKLLRRGKHWVLV 125 >SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosaccharomyces pombe|chr 3|||Manual Length = 822 Score = 28.3 bits (60), Expect = 1.3 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 643 PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 530 PVKK P+KK + A++N E DE + E D+E+ Sbjct: 72 PVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108 >SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual Length = 4717 Score = 27.9 bits (59), Expect = 1.8 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Frame = -1 Query: 664 QLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN-DASENV 506 +L+ E +S + EA E NG + S EN D+EE N D E V Sbjct: 3935 ELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEV 3988 >SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 764 Score = 27.9 bits (59), Expect = 1.8 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = -1 Query: 613 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 509 E++E + ++N TDEA ED+ + D + S + Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSH 389 Score = 25.8 bits (54), Expect = 7.1 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Frame = -1 Query: 790 VVRNTCFEFY-SLFKFIHFFNLPCNNGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKV 614 + R+T ++ +++K H F NG G GS+ Q +S + Sbjct: 288 ISRDTTYQLIIAIWKNTHPFLTTLANGHGVMDASGNHHSGSSNQSINADSSAGSEGVDEG 347 Query: 613 EAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 509 + E+N + + D+ ++ N DA +SN + E+ Sbjct: 348 TSTEANDESSEDDDEDNNTDEANEDA-QSNVSDES 381 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 27.1 bits (57), Expect = 3.1 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = -1 Query: 679 WGSNPQLSPXESPVKKSP----AKKVEAAESNGKENGTDEAPEDSPAENGD 539 +GS +++P +P K+P +K V A+ + K+N D++ + S + + Sbjct: 163 FGSTAKVAPAPAPSTKTPLANISKPVVQAQKDSKDNSWDDSSKQSNTQTAN 213 >SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Schizosaccharomyces pombe|chr 1|||Manual Length = 938 Score = 27.1 bits (57), Expect = 3.1 Identities = 18/74 (24%), Positives = 33/74 (44%) Frame = -1 Query: 721 NNGRRTRRQEGXAPWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 542 NN TR + + + +SP S + E+N + + T+EA S E Sbjct: 50 NNSSLTRSTDDPSVEIRSKLVSPDNEANLLSDQNITISNENNNENDTTEEAETSSGNEAA 109 Query: 541 DAEESNDASENVMP 500 D E+S+ +++ +P Sbjct: 110 DDEDSSSDAQSSVP 123 >SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1647 Score = 26.2 bits (55), Expect = 5.4 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -1 Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509 +ES ++ DE E+ EN D + D +EN Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENEN 273 >SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schizosaccharomyces pombe|chr 2|||Manual Length = 451 Score = 26.2 bits (55), Expect = 5.4 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -1 Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509 +ES G+D + S +E+ + E ND+S + Sbjct: 153 SESESSSEGSDSSSSSSSSESESSSEDNDSSSS 185 Score = 26.2 bits (55), Expect = 5.4 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = -1 Query: 607 AESNGKENGTDEAPEDSPAENGDAEESNDASEN 509 +ES G+D + S +E+ + E ND+S + Sbjct: 207 SESESSSEGSDSSSSSSSSESESSSEDNDSSSS 239 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 26.2 bits (55), Expect = 5.4 Identities = 15/53 (28%), Positives = 24/53 (45%) Frame = -1 Query: 673 SNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 515 S+ S S +S + E+ E T+E E S + D+E S+D+S Sbjct: 163 SSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSS 215 >SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 25.8 bits (54), Expect = 7.1 Identities = 14/58 (24%), Positives = 23/58 (39%) Frame = -1 Query: 673 SNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENVMP 500 SNP +P + S K A ++NG + + P S +AE ++ P Sbjct: 393 SNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAENKPPVAQQSPP 450 >SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces pombe|chr 1|||Manual Length = 568 Score = 25.8 bits (54), Expect = 7.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2 Query: 156 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 46 LQ + L M L + C+ + + + CC+ F VSLSF+ Sbjct: 74 LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108 >SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schizosaccharomyces pombe|chr 1|||Manual Length = 286 Score = 25.8 bits (54), Expect = 7.1 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -1 Query: 685 APWGSNPQLSPXESPVKKSPAKKVEAAESNGKENGTDEAPEDS-PAENG 542 APWG + + + + ++ KK+ SN K ++ P D+ PA+ G Sbjct: 212 APWGFSSAFNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLG 260 >SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 25.4 bits (53), Expect = 9.4 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 565 EDSPAENGDAEESNDASENVM 503 EDS NG+ EE+ D +E V+ Sbjct: 52 EDSNKANGNGEETTDGAEGVL 72 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,924,088 Number of Sequences: 5004 Number of extensions: 56568 Number of successful extensions: 206 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 206 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 385381248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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