Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0229.Seq
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    30   0.52 
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    27   2.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   3.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   6.3  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   6.3  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 479 PVPNSPYSESITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 643
           P+P  P   S++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 301 GRPTKSWFPWWRTRWTPGMRGRXXFDV 221
           G P  SW   W TRW P +     F V
Sbjct: 453 GGPQGSWTDSWSTRWNPAVFANAGFIV 479


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 607 WRNSEEARTDRPFPTVAXLKWANGKL 684
           ++N  EAR   PF   + L W NG +
Sbjct: 53  FKNEREARKQLPFEVFSDLIWTNGSI 78


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 647 GKGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQS 543
           GK +  R SSLL +     C AR   W+ P   ++
Sbjct: 25  GKNQWARISSLLVRKTPKQCKARWYEWIDPSIKKT 59


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +2

Query: 107 ITASAHRATSETTWASTHRRPAPRWSTATSHAKSTPXTYIEXXSSPH 247
           +  S  +    T   STH  P    STAT+     P T       PH
Sbjct: 160 VNQSYSKGIDGTALPSTHANPVAAPSTATTQHTQLPKTSAVSHQKPH 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,313
Number of Sequences: 5004
Number of extensions: 70920
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)