BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0227.Seq (928 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 29 1.2 SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 3.8 SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 3.8 SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 5.0 SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 6.6 SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 8.7 SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.7 SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 8.7 >SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizosaccharomyces pombe|chr 3|||Manual Length = 979 Score = 28.7 bits (61), Expect = 1.2 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -2 Query: 165 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 61 C+IN W LRL +L + NQ S E++ EKR+P Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308 >SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1029 Score = 27.1 bits (57), Expect = 3.8 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +3 Query: 231 KLTTSDARPPSIGFDLIKALIPSL-VRV 311 K TS ARPP +GF KAL+PS +RV Sbjct: 959 KFVTSVARPPILGF---KALMPSFCIRV 983 >SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 27.1 bits (57), Expect = 3.8 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 494 DDKIYPHEIRSKTLFSKLQ*PTPIFFINYLH 586 D K+YP I F L+ P+FF+ YLH Sbjct: 214 DGKVYPQSIIRLEEFKNLKANEPVFFL-YLH 243 >SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 680 Score = 26.6 bits (56), Expect = 5.0 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +3 Query: 399 FAVSPSCRIRHEID-LQQYYDVNDVTF 476 FA +PS R++ ++ L+ YY+ DVT+ Sbjct: 54 FAETPSVRVQRALEILRYYYEQEDVTY 80 >SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1000 Score = 26.2 bits (55), Expect = 6.6 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = +2 Query: 554 PTPIFFINYLHTPNVREKSINILDQNEIVIS 646 P PI F +HT + + ++N+ NE +S Sbjct: 532 PLPILFDQCVHTVKLEDNTVNLSFVNETTVS 562 >SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1465 Score = 25.8 bits (54), Expect = 8.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 503 IYPHEIRSKTLFSKLQ*PTPIFFINYLHTPNVREKSINILDQNE 634 I P E+R +FSKL FI + +T ++E + +L +E Sbjct: 169 IRPSEVRYANIFSKLSFSWISSFIKFGYTNYLKESDVWLLPPDE 212 >SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 25.8 bits (54), Expect = 8.7 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = -1 Query: 673 NQAIQNVLL*NHDFVLI*DINRFFTNVRSM*VIDEKDRSGLLKFAKQSFGTN 518 NQ + N+ N + I D++ ++ +++ ++DE GL ++K+S G N Sbjct: 35 NQNLYNIETENVKDLNIEDVD-YYEKLQNFKIVDENIDPGLRTYSKRSVGVN 85 >SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 306 Score = 25.8 bits (54), Expect = 8.7 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 52 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 150 P MW P N+ + YP +PW S+ LPS Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,667,044 Number of Sequences: 5004 Number of extensions: 74642 Number of successful extensions: 153 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 153 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 469338710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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