BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0222.Seq (357 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 2.6 SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 25 4.6 SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 24 8.0 >SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual Length = 978 Score = 25.4 bits (53), Expect = 2.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 204 NWXHSYCDVRGEILGSSQDEXQRKHLPKVFSSIKNE 97 NW + ++G I SSQ E +L KV SI +E Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157 >SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 334 Score = 24.6 bits (51), Expect = 4.6 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = -2 Query: 161 DRRKTNXSESICQRCFHQSRTKXRGSKA--IRY 69 + + N IC CFH + G KA +RY Sbjct: 190 ENSENNREALICSHCFHHNGLASYGEKASDVRY 222 >SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 23.8 bits (49), Expect = 8.0 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 21 NVGGSLDDIFTVRTRAVSNRLRTSXFRS*LMKTPLANAFA 140 N+GG L D+F R R + + +R L LAN A Sbjct: 305 NMGGYLMDLFIERERVQAMIMMCKAYRPSLTMEFLANTLA 344 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,274,150 Number of Sequences: 5004 Number of extensions: 20147 Number of successful extensions: 41 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 41 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 107972554 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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