BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0220.Seq (903 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 100 3e-22 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 61 2e-10 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 49 1e-06 SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 3e-04 SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 8e-04 SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.003 SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.008 SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 36 0.008 SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.014 SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 35 0.014 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.042 SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.042 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.056 SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.097 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.22 SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.30 SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.39 SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.39 SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.39 SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 30 0.52 SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 3.6 SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 3.6 SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.6 SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 4.8 SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 6.4 SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 8.4 SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 8.4 SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 26 8.4 SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 8.4 >SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 100 bits (239), Expect = 3e-22 Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 2/158 (1%) Frame = +1 Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438 +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137 Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAKRWPTSCQPLCT*TTNRLF--GEVMV 612 K +G++ PTPIQ Q WP+AMSG+ + K + L G+ + Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197 Query: 613 RLLWSWAAXQRVSTTNFSKLLQILGHTSYVRNTCVFGG 726 L+ A R + G +S +RNTCV+GG Sbjct: 198 VLV---LAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232 Score = 66.9 bits (156), Expect = 4e-12 Identities = 41/93 (44%), Positives = 52/93 (55%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683 +D+VG+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVL E + QQ F Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTREL-AVQIQQECTKF 218 Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVI 782 G + CV+ + + L RG +I I Sbjct: 219 GKSSRIR-NTCVYGGVPRGPQIRDLIRGVEICI 250 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 60.9 bits (141), Expect = 2e-10 Identities = 33/94 (35%), Positives = 55/94 (58%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGGLXES*HNKFQQVAADF 683 +D++GV KTGSGKT+A++LP HI +Q P++ G+GPIA+++ E F++ F Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE-CKPF 514 Query: 684 GXHILCS*HVCVWWWFLKESKPGTLRRGXKIVIC 785 +L C + + + L+RG +IV+C Sbjct: 515 -LKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547 Score = 48.0 bits (109), Expect = 2e-06 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432 ++ + F K+FY + SP EV+E R + + + + G++ P+ + + Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431 Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGK 507 + ++GY++PT IQAQ P SG+ Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGR 456 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 48.8 bits (111), Expect = 1e-06 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLGGLXE 644 KDL+G+ +TGSGKT A+I+P I+ I+ PP+ + GP A+VL E Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRE 336 Score = 42.3 bits (95), Expect = 9e-05 Identities = 16/56 (28%), Positives = 34/56 (60%) Frame = +1 Query: 340 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 + ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287 >SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 578 Score = 40.7 bits (91), Expect = 3e-04 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = +1 Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 PI F+E + +++G+K YKEPTPIQA WP ++G+ Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203 Score = 36.3 bits (80), Expect = 0.006 Identities = 13/26 (50%), Positives = 23/26 (88%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHIN 581 +D+VG+ +TGSGKT+A+ +PA+ ++N Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLN 228 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 39.1 bits (87), Expect = 8e-04 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +1 Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+ Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207 Score = 26.2 bits (55), Expect = 6.4 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAI 569 +DL+ +TGSGKT ++ P + Sbjct: 207 RDLMACAQTGSGKTAGFLFPIL 228 >SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 37.1 bits (82), Expect = 0.003 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINN 584 +D+VG+ +TGSGKT A+++P I H+ + Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS 133 Score = 26.2 bits (55), Expect = 6.4 Identities = 10/37 (27%), Positives = 19/37 (51%) Frame = +1 Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 F+ + + + G+K PTPIQ + P+ + G+ Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107 >SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 465 Score = 35.9 bits (79), Expect = 0.008 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590 +D++G+ +TGSGKT A+ LP I + N P Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112 Score = 29.9 bits (64), Expect = 0.52 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +1 Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 501 F+E D + + + +G+K PTPIQ + P+ ++ Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLN 82 >SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 735 Score = 35.9 bits (79), Expect = 0.008 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHI 578 +D++G KTGSGKTLA+I+P I ++ Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENL 101 >SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 35.1 bits (77), Expect = 0.014 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVL---GGLXES*HNKFQQV 671 KDLV +TGSGKT AY++P + + Q I G AL+L L + +N +++ Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111 Query: 672 AADFGXHI 695 A HI Sbjct: 112 TAFCSKHI 119 Score = 29.9 bits (64), Expect = 0.52 Identities = 11/47 (23%), Positives = 26/47 (55%) Frame = +1 Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52 >SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 35.1 bits (77), Expect = 0.014 Identities = 13/22 (59%), Positives = 19/22 (86%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAI 569 +D++G KTGSGKTLA+++P I Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 33.5 bits (73), Expect = 0.042 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590 KD+VG TGSGKT A+I+P + + +P Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325 >SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 33.5 bits (73), Expect = 0.042 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 617 KDLV TGSGKTLAY+LP + + G G + Sbjct: 39 KDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGAL 76 Score = 30.7 bits (66), Expect = 0.30 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +1 Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507 F+ N +++ V G+K+ TP+QA P+ + K Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 33.1 bits (72), Expect = 0.056 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYPKRVPAK 543 FE+ + G+ G++ P+PIQ + PIA+SG+ LA K K Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94 Score = 27.9 bits (59), Expect = 2.1 Identities = 10/47 (21%), Positives = 25/47 (53%) Frame = +3 Query: 447 GLQRTDAHSSSRLADSYVWKDLVGVPKTGSGKTLAYILPAIVHINNQ 587 G +R + + +D++ K G+GKT A+++P++ ++ + Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109 >SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 32.3 bits (70), Expect = 0.097 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +1 Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 480 +E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 31.1 bits (67), Expect = 0.22 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 507 DLVGVPKTGSGKTLAYILPAIVH 575 D++G TGSGKTLA+ +P + H Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183 >SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 709 Score = 30.7 bits (66), Expect = 0.30 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590 KD +TGSGKTLAY+LP + + P Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLP 207 >SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 30.3 bits (65), Expect = 0.39 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQPP 593 +DL+ TGSGKT+AY+ P + + P Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP 113 >SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pombe|chr 1||Partial|Manual Length = 1887 Score = 30.3 bits (65), Expect = 0.39 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +3 Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPP 593 +L+ V TG GK+L++++PA++ Q P Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236 >SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1919 Score = 30.3 bits (65), Expect = 0.39 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +3 Query: 507 DLVGVPKTGSGKTLAYILPAIVHINNQPP 593 +L+ V TG GK+L++++PA++ Q P Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236 >SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 29.9 bits (64), Expect = 0.52 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIVHINNQP 590 ++ +G KTGSGKT A+ LP I + P Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP 73 >SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 604 Score = 27.1 bits (57), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +3 Query: 528 TGSGKTLAYILPAI 569 TGSGKTL+Y++P + Sbjct: 182 TGSGKTLSYVIPIV 195 >SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schizosaccharomyces pombe|chr 1|||Manual Length = 373 Score = 27.1 bits (57), Expect = 3.6 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Frame = +1 Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 387 ++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314 Query: 388 IQYFEEANFPDYVQQGVKT 444 + E+ QG T Sbjct: 315 MHVVEQELLDGQKLQGAAT 333 >SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 27.1 bits (57), Expect = 3.6 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 504 KDLVGVPKTGSGKTLAYILPAIV 572 KD+ + TG GK+L Y LPA++ Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557 >SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 530 Score = 26.6 bits (56), Expect = 4.8 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = -3 Query: 238 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 92 T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ + Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197 Query: 91 IPVT 80 PV+ Sbjct: 198 APVS 201 >SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 26.2 bits (55), Expect = 6.4 Identities = 8/35 (22%), Positives = 21/35 (60%) Frame = +3 Query: 156 DLATVAIDLEDLEDLVGKKNSLEVRTCVAQIGICF 260 D++ + + + + +NS+++ +C+ Q+G CF Sbjct: 276 DISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 25.8 bits (54), Expect = 8.4 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 253 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 110 I + +T + T+R + TKSS SSK +K+ R + A K GT Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157 >SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 790 Score = 25.8 bits (54), Expect = 8.4 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Frame = -2 Query: 185 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 27 + +Y Q+E +NY I C L +WN Y +F + +++W+ Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220 >SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 25.8 bits (54), Expect = 8.4 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = -1 Query: 555 CRPTFCRNPFWVRQLNLSRHSYRPALSL----NGRRFFVTHCLYTLLHIIRKICFFKVLN 388 C P + + + Q ++S Y P L+L G F+ Y + R F L+ Sbjct: 199 CNPPYISDDDFAAQTDISVRKYEPKLALLAKNGGNEFYYKFSQYIKRMLQRNAKDFVPLS 258 Query: 387 RIM-NLNATYSYLVIISVLFDFIW 319 I+ + +T+ ++ S+ D W Sbjct: 259 LIVFEIGSTHQAKIVKSLFDDTNW 282 >SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 25.8 bits (54), Expect = 8.4 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +2 Query: 722 VVVPKREQARDFEKGXENSHLLLPGRLIG 808 V+ KR++ + F+KG PG+L+G Sbjct: 219 VLAKKRKERKQFKKGFRPVTFSAPGKLVG 247 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,720,580 Number of Sequences: 5004 Number of extensions: 79701 Number of successful extensions: 246 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 244 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 456499320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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