BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0210.Seq (895 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 29 1.2 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 29 1.2 SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7 >SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1462 Score = 28.7 bits (61), Expect = 1.2 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Frame = +1 Query: 118 VEQIKSNSSTKNCDVPDLFLILT-----LVSIPPNQLYLTCIDNCNMT 246 ++ ++S +T D+ DL+ +L+ L+ +P Q+YL C+D T Sbjct: 1149 LQLVQSAVNTNTADIDDLYRLLSKIPTNLLDLPMFQVYLGCVDTLIQT 1196 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 28.7 bits (61), Expect = 1.2 Identities = 15/67 (22%), Positives = 33/67 (49%) Frame = -1 Query: 793 RFAYPNGXPGTASNRXSRPTSSKTPCHQYQKFKVISIVQIXISHTRFLTAEVASVN*SLQ 614 +F PNG P +N+ P + +YQ++ + + + S+T + A+ + ++Q Sbjct: 422 KFDEPNGSPVLHANKIQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQ 481 Query: 613 TRSDFSH 593 T + +H Sbjct: 482 TIALLAH 488 >SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 477 Score = 27.5 bits (58), Expect = 2.7 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +1 Query: 436 VILSIGQFSIYY---VLNKLQYIMYMIIVG*VTFALTTSFNILFXCXTXV*RVPFYERN 603 VI + G YY +LN + Y+MY +I L +L C T + R+P + + Sbjct: 3 VIANKGALWAYYCKRLLNSVTYMMYPLIRKRTMKKLLLIVGLLLACSTVMRRIPLFHES 61 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,971,389 Number of Sequences: 5004 Number of extensions: 53272 Number of successful extensions: 100 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 450492750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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