BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0207.Seq (668 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 27 1.8 SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 26 5.6 SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.5 SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 7.5 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.9 >SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 615 Score = 27.5 bits (58), Expect = 1.8 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = +3 Query: 366 VTTSPCREWVXCAPAAFLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYIES**GRHLKDA 545 +TT ++ + A L G+RF G+L G F D S R +++S R Sbjct: 432 ITTRAGKDLISSLVAGLLTIGTRFGGALDGAAQEFSKAYDAGLSPRAFVDS--CRKANKL 489 Query: 546 SPVLDHAI-CKSYPD 587 P + H I ++ PD Sbjct: 490 IPGIGHRIKSRNNPD 504 >SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 413 Score = 25.8 bits (54), Expect = 5.6 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -1 Query: 533 MSALSTFDVVSATTMVVTGNGESGFDSGEGA*ETATTSKEGSRRAXYPLP 384 MSA +T VV T +TG E F TA T+ +G R + PLP Sbjct: 1 MSATATTTVVEPPTTTLTGATEPPF--------TAYTTSQGLRVSPVPLP 42 >SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizosaccharomyces pombe|chr 3|||Manual Length = 979 Score = 25.4 bits (53), Expect = 7.5 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -2 Query: 502 LRLPWLSRVTGNQGSIPEREPEKRLP 425 LRL +L + NQ S E++ EKR+P Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308 >SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizosaccharomyces pombe|chr 1|||Manual Length = 950 Score = 25.4 bits (53), Expect = 7.5 Identities = 14/46 (30%), Positives = 20/46 (43%) Frame = -2 Query: 496 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQXTHSRHGEVVTKN 359 +P +S V + IPER+ + L P H EVV +N Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 25.0 bits (52), Expect = 9.9 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 364 SSLPPRAGSG*XARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTSK 516 SSLPP A + PS + + P P P P P++ VA T+S+ Sbjct: 169 SSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP--PPPLSQAPVANTSSR 217 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,687,966 Number of Sequences: 5004 Number of extensions: 54447 Number of successful extensions: 139 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 305854096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -