Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0052
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   146   2e-36
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   146   2e-36
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   0.91 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.6  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   2.8  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   8.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.5  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    25   8.5  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  146 bits (354), Expect = 2e-36
 Identities = 65/91 (71%), Positives = 77/91 (84%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64  KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123

Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRL 503
           G+DFYVV+ RPG  VA R+ + G+VG+ H++
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKI 154



 Score =  108 bits (259), Expect = 7e-25
 Identities = 55/82 (67%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
 Frame = +1

Query: 49  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 228
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 229 EKIAVHCTVEELKQKKSL-RGV 291
           EKIA H TV   K ++ L RG+
Sbjct: 63  EKIACHVTVRGPKAEEILERGL 84



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 461 QKA*DRKSGISPPPHKEDAMKWFQQKYD 544
           +KA   + G +   + ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  146 bits (354), Expect = 2e-36
 Identities = 65/91 (71%), Positives = 77/91 (84%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64  KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123

Query: 411 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRL 503
           G+DFYVV+ RPG  VA R+ + G+VG+ H++
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKI 154



 Score =  108 bits (259), Expect = 7e-25
 Identities = 55/82 (67%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
 Frame = +1

Query: 49  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 228
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 229 EKIAVHCTVEELKQKKSL-RGV 291
           EKIA H TV   K ++ L RG+
Sbjct: 63  EKIACHVTVRGPKAEEILERGL 84



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 461 QKA*DRKSGISPPPHKEDAMKWFQQKYD 544
           +KA   + G +   + ED + WF+QKYD
Sbjct: 141 RKAQRGRVGYTHKINAEDTINWFKQKYD 168


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 287 PLKDFFCFSSSTVQWTAIFSLRRIPKDR 204
           PL D + F   T+ WT + S+ R P  R
Sbjct: 271 PLSDLWLFDLETLSWTEVRSIGRFPGPR 298


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 220 GYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQHI 104
           G     +Y   W I A +L V P PWR+ S+   + + I
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSSQRGLRKSI 159


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 363 LEYRSQNYPWRRSCHAAIHIL*LSNPSQGFLLL*LLDCTMDSNLFITTDTKRPH 202
           LE R +NY W+R     IHI+ L    +  +L   +  T+++   +   + RP+
Sbjct: 33  LEVRMENYVWKRRSD-GIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPY 85


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 79  HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 222
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 290 TPLKDFFCFSSSTVQWTAIFSLRRIPKDRTVYLALENTGCCPVS 159
           TP+ DF  FS  +V   + F++   P+ +  +  + NT  C +S
Sbjct: 353 TPVPDFLNFSHKSVMGRSTFNMPNFPEPK-FFEDIPNTERCILS 395


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 398 NWNLWTGLLRRTWPARFQRSTQK 466
           NW+    L R  WP  F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 382 IPKSMCS*IPKPKLPVAEKLSRRNSYSLTFKPLSRISSALAPRLYNGQQSFH 227
           IP      I K K+PV  ++        T      I  AL+ +    Q++FH
Sbjct: 14  IPNKGMGMIAKVKIPVGTRIFAETPLIRTKSDAKEIEEALSTKTKEEQEAFH 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,212
Number of Sequences: 5004
Number of extensions: 54185
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)