Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0041
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 97 3e-21
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 44 2e-05
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 29 0.84
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 26 4.5
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 4.5
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 4.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.5
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 5.9
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 5.9
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 5.9
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 5.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 7.9
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 96.7 bits (230), Expect = 3e-21
Identities = 39/83 (46%), Positives = 61/83 (73%)
Frame = +1
Query: 250 VPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCY 429
+PA+ S+ A+E+ K DDT+WLTY++V + +++EY+S I+ + P+YWLLK IF+IW
Sbjct: 67 MPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVYWLLKAIFLIWLA 126
Query: 430 LPTEYNGSLVIYYRIIRPYYQKH 498
LP ++NG+ +IY +IRPY H
Sbjct: 127 LP-KFNGATIIYRHLIRPYITPH 148
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNS 238
++ ++Q++ D + +L E+ GV++LY+FL L+L +G L+ N
Sbjct: 3 FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFLLTNL 62
Query: 239 IGFVYP 256
+ F P
Sbjct: 63 LAFAMP 68
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +1
Query: 292 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 471
+++ + + YW VY C + E + W P Y K +F +W P G+ IY
Sbjct: 97 EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155
Query: 472 IIRPYYQKH 498
I P+ H
Sbjct: 156 YISPFLSDH 164
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 219 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 124
A K +KYKP+N KP + + PT S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 86 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 208
+++ K+K TKY ++ N ++I+LG+ FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 664 LFKFYLKHM*KTSRFNWSFLMVSAHQTGSIIIFLIA 557
L F+ + + F + ++ S + TG+I+IFL A
Sbjct: 421 LISFFTPFIQASIGFKYGYVFASCNLTGAIVIFLFA 456
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 223 INMQLDRLRVPAYMSMKALESPQKDDDT 306
I M++D L+ MK+ +SP+KD++T
Sbjct: 173 IEMEIDLLKRAQAELMKSEDSPEKDEET 200
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 579 LPVWWADTI-RKDQLNLLVFYICF 647
L W+ T+ RK + N++ FY CF
Sbjct: 1038 LTFWYGSTLMRKGEYNIVQFYTCF 1061
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 20 G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 112
G P + + L EYK E+S+ND S W
Sbjct: 20 GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 430 LPTEYNG-SLVIYYRIIRPYYQKHHGRTMI 516
LP+ G S+ IY+++I+ Y K H + +I
Sbjct: 696 LPSNLGGKSVSIYHKVIKKVYGKEHAQQII 725
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 366 FHRRLVSIVLAVKVHLRDLVLPAD*IQRVPRDLLPYHSSLLPEASWSYDDMGQHRE 533
+ RRL+SI+ +++ H+R+ + P + R+ R+ P S P + + D +R+
Sbjct: 439 YERRLLSIMESIRPHIRN-IDPFGGLSRLGREEYPRRLSNPPPSQKTNQDAWTNRK 493
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 337 CFSIVEYFSDFIVGWFPLYWLLKC 408
C ++EYF F + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 50 SKLQEYKDNIEQSLNDKSKPWTKYFE 127
+++ E D I++ LNDK K W F+
Sbjct: 53 NEMLEVMDIIDRRLNDKGKNWRHVFK 78
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 319 YWVVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 435
Y Y FSI + FSDF++ YW+ + + W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,112
Number of Sequences: 5004
Number of extensions: 68556
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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