Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0038
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    28   1.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   7.8  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 295 SEIYNHEFPNKQMTRMIFKS 354
           S++YNHE P  Q+T + F++
Sbjct: 863 SDVYNHEIPGGQLTNLKFQA 882


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +1

Query: 151 DVEALSTCIRLCELGVDPEVLAHVIKEIRKMGENVKKHLIYKHR*SQLSEIYNHEFPNKQ 330
           D+   ST ++  ++   P +  H+I        +  +HL+Y    S L EIY+ +  NK 
Sbjct: 218 DISTFSTILQKMKIFNYPSI--HIIALKSPPLFSPYQHLLYVAEASGLLEIYDLKLENKL 275

Query: 331 MTRM----IFKSIL 360
           ++ M    IFK +L
Sbjct: 276 VSGMNLSPIFKQVL 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,723
Number of Sequences: 5004
Number of extensions: 51728
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)