Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    24   6.2  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    24   6.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    24   6.2  

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 22  RWQFWIKAIFSKYMQKCGFVFV*VFNRP*LK 114
           RW+FWI  + S      G VF+     P LK
Sbjct: 195 RWEFWILLMLSGVSLLAGVVFLKETYAPVLK 225


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 143 SINDKLKLIFFSHGRLKTQTNTNPHFC 63
           S+N K    F+ H  L ++ ++NP  C
Sbjct: 150 SLNQKQNENFYEHTHLNSRDDSNPSSC 176


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 146 VSINDKLKLIF-FSHGRLKTQTNTNPHFCIYFEKMAFIQN 30
           VS+++  +  F F HG+ ++  +  P  C+  + M  I+N
Sbjct: 196 VSVDENSQTSFPFVHGQPESTMSRKPKLCVQSKSMTNIRN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,647
Number of Sequences: 5004
Number of extensions: 24464
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)