Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   5.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.3  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.3  

>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 520 HSVCAEEANDK---HLTAWADICRKYSLQHTPLEPSAGV 413
           H++ +E+A+ +    +T W D   KY L +   + S GV
Sbjct: 479 HALTSEDADSEPVLFITKWVDYSNKYGLGYQLSDESVGV 517


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 191 IFDFI*RLQKSVFLILSFRFALAYI*YSLV 102
           +F F    +K+ FLI  FRF+ ++I Y+L+
Sbjct: 832 LFSFEPLSKKNRFLINLFRFSFSFILYNLL 861


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 68  YTSCPKNFFCLLLANIKYRLKRNESLKLKTPTSV 169
           YT+  K  F  LL+ ++   K NE L   TP  V
Sbjct: 100 YTAKTKEDFAYLLSQLETIFKENEILNEFTPVEV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,515
Number of Sequences: 5004
Number of extensions: 34057
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)