Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0069.Seq
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    27   2.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   3.9  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 354 HNPSNRRYFLFTIYFLYV--LYIRICIHIIVLNLI 256
           H+PS++R      Y+L+V  +Y  +  H ++L LI
Sbjct: 44  HDPSDKRQIWLEKYYLFVRQIYTYLVTHKVILTLI 78


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 159 YFFSSSWASFGTQTSRLKVYMCSGRRL-RVRKHKNGLGFNKFILH 28
           Y FSS    F  ++SR   Y CS   + +V +H N LG ++++LH
Sbjct: 153 YLFSSY---FSYKSSRQ--YTCSSEEISKVFRHLNRLGGSEYVLH 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,058
Number of Sequences: 5004
Number of extensions: 50499
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)