Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0066.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    27   2.2  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   2.9  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   6.8  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 474 QKNKSHVYEYKTNKILSKF 530
           Q N SH+Y Y T +++SKF
Sbjct: 417 QINTSHLYNYSTKQMISKF 435


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 182 MLKYITAKWLYRHSYS 229
           +L+Y T +W+ RHSYS
Sbjct: 13  ILRYSTKRWMNRHSYS 28


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 435 FTKLFENKFK*GYQKNKSHVYEYKTNKILSKFQTLSSFLTKP 560
           FT + E+KF   Y+ N  H Y  + N+   K       LT P
Sbjct: 335 FTNVTEDKFNKEYRYNIRHTYGLEGNRKNYKGYNCQQILTGP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,678
Number of Sequences: 5004
Number of extensions: 64964
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)