Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F07f
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   2.8  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   2.8  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   3.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   4.9  
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo...    24   6.5  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 158 EANAQFKRDRAVDSEILSILRQRYE 232
           +AN  F RD  ++  +LS L +RYE
Sbjct: 487 DANDSFSRDLRLEKILLSHLSKRYE 511


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 131 YDDDVVCDFE-ANAQFKRDRAVDSEILSILRQRYEDCMMY 247
           YDDDV C F+   A+   D  +D  I+  +R R  D ++Y
Sbjct: 254 YDDDVDCGFKIIEAREIDDLGIDG-IVKKIRDRVGDNLVY 292


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   ALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRR 109
           ALY+TVDAP T      +EP + +Y   H   R+
Sbjct: 207 ALYSTVDAPET------LEPLKHRYKSQHHRLRQ 234


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 24  SMLR*HGSEKLLSNQTRRSTLGIIKTT 104
           S L  +GSEKL+S+ +++   G+++TT
Sbjct: 243 SSLDVYGSEKLISSGSQQPGHGMVQTT 269


>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 164 NAQFKRDRAVDSEILSILRQ--RYEDCMMYEQPDHATKCRSLWDK 292
           +A+F      +  ++S L +  +YE  + + Q DH+ K   L+DK
Sbjct: 73  SAKFVGRGTPEDHVISYLFEAGKYEFEVFFYQKDHSLKLMGLYDK 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,063
Number of Sequences: 5004
Number of extensions: 20560
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)