Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0014.Seq
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   3.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   4.2  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    24   7.3  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   9.6  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 24  VQCVKLTNKVQPQYFDTYYFNIKCYYYILLEFSIKLRHY 140
           V+C K+  K+   +    +FNI C    +++ +   R Y
Sbjct: 469 VECEKMERKISDAFQHGRFFNILCKIMFIIDNNRASREY 507


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 219  LVNYIRGVPYSRLWEYQFN 163
            L+NY   VPY + W + +N
Sbjct: 2153 LINYWLAVPYGQAWRFFWN 2171


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 180 WEYQFNEEYKCFVDNDVVL 124
           W +  N+EY C+V N   L
Sbjct: 126 WHFIPNQEYNCYVKNKTEL 144


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 162 EEYKCFVDNDVVLL 121
           E+YKC++  DV L+
Sbjct: 319 EQYKCWISRDVTLI 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,220,176
Number of Sequences: 5004
Number of extensions: 20173
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)