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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0113
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...   134   1e-32
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...   134   1e-32
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...   134   1e-32
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...   134   1e-32
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...   134   1e-32
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    85   9e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    43   3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    41   2e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    40   3e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    29   0.37 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   2.6  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.6  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   8.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.1  

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 36/70 (51%), Positives = 46/70 (65%)
 Frame = +1

Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
           KRKKK Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR
Sbjct: 79  KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136

Query: 436 HYCGKCHSTM 465
            YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 78  QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 138 QKESTLHLV 146



 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 214 QKESTLHLV 222



 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 290 QKESTLHLV 298



 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 366 QKESTLHLV 374


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score =  134 bits (323), Expect = 1e-32
 Identities = 64/69 (92%), Positives = 68/69 (98%)
 Frame = +2

Query: 26  KIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 205
           +IFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 206 QKESTLHLV 232
           QKESTLHLV
Sbjct: 62  QKESTLHLV 70



 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 36/70 (51%), Positives = 46/70 (65%)
 Frame = +1

Query: 256 KRKKKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDR 435
           KRKKK Y+TP           LAVL++YKV+++G + RLRREC    CGA  FMA  +DR
Sbjct: 79  KRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDR 136

Query: 436 HYCGKCHSTM 465
            YCG+CH T+
Sbjct: 137 LYCGRCHLTL 146


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 84.6 bits (200), Expect = 9e-18
 Identities = 35/68 (51%), Positives = 52/68 (76%)
 Frame = +2

Query: 29  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 208
           I VKTLTGK I L+++P+D +  +K ++++KEGIPP+QQRLI+AGKQ+ D +    Y+++
Sbjct: 3   IKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLE 62

Query: 209 KESTLHLV 232
             S LHLV
Sbjct: 63  GGSVLHLV 70


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +2

Query: 50  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 223
           GK   LE+EP++T   +K ++     +PP +Q++I  G QL+D   L    I+  +TL
Sbjct: 10  GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +2

Query: 53  KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 214
           K +  +V     I  +K KIQ ++     +Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12  KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +2

Query: 35  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 214
           +K    +   + V+   ++  +K  I     I   +QRLI+AG+ L+D  +L  Y IQ  
Sbjct: 8   IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67

Query: 215 STLHLV 232
            ++HLV
Sbjct: 68  HSIHLV 73


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 50  GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 229
           GK + ++  P DT+ + K  +  + G  P +  L       +D  TL+DY I    +L +
Sbjct: 11  GKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 212 PSGYCSPRGYVHLPAAFQQRSTSVDWEGF 126
           PS +  PRG V+ P+  ++R + +   GF
Sbjct: 17  PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 325 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 483
           V+R Y ++ +N +     R C  E      F  V++D H   KC + ++    D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 558 SRFYLKSIIHSSRERFFRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 418
           S+  +K+ + SS ++F+R  G  +F  V     +VTL   + V+  R
Sbjct: 114 SKVGIKASLDSSDKQFYRYWGGQIFSAVIAGAASVTLTNPIWVVKTR 160


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 134 PNQQRLIFAGKQLEDGRTLSDYNI 205
           PNQ     AGK+L+  R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,144
Number of Sequences: 5004
Number of extensions: 42176
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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