Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30030
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   0.83 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   2.5  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    24   5.9  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 12   HFALIQNKIHYVLP*VFHCCTGSPVIDDL 98
            H +L  N IHY+L   +H    SPV   L
Sbjct: 1571 HPSLYSNPIHYLLRKAYHTTNASPVATSL 1599


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 3    YTEHFALIQNKIHYVLP*VFHCCT 74
            +++HF+ ++N  H ++  +  CCT
Sbjct: 1217 FSKHFSNLENSFHSLVQKLLSCCT 1240


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 175 VLTAAGTAHEVYSHVRNRGNQG 240
           V T  G    VYS ++N GN+G
Sbjct: 80  VSTMEGDEQIVYSFIKNSGNEG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,261,767
Number of Sequences: 5004
Number of extensions: 22790
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)