Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00007
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    31   0.067
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.4  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   2.5  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   3.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   4.4  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    24   7.7  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 31.1 bits (67), Expect = 0.067
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 294 P*YSGLSATVPLFPTQGGPRTSPRSHPASGPA 199
           P Y G++A  P+ P QG P   P S P++GPA
Sbjct: 527 PGYPGMNARGPV-PAQGRPMMMPGSVPSAGPA 557


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 155 GGRPTAVPHREPGVPAGPE 211
           GG PTA P  EP V  G E
Sbjct: 835 GGNPTAAPTNEPTVTTGTE 853


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +3

Query: 9   NNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLI 182
           N V+   L   HE+  K+DV +D+ GD     S  N         Y+   K G  +    
Sbjct: 188 NTVVDPELKRVHELVEKVDVVIDTVGDPLLMKSALNQLGIGGRLSYISAPKQGSIEFSYD 247

Query: 183 ENREYRQGLKL 215
             + YR+ LK+
Sbjct: 248 MKQIYRKNLKI 258


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 276 SATVPLFPTQGGPRTSP--RSHPASGPAGTPGSR*GTAVGRPPSLG 145
           SATVP+ P +G P TS    + PA G A       G      PS G
Sbjct: 300 SATVPISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSG 345


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 2   GKQQRHLQDTEHRTRDVLETGRERGQLR 85
           GK Q HL+  E   RD+ E   E   LR
Sbjct: 384 GKLQAHLEKFEQTERDISEKNEEVKSLR 411


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 180 IENREYRQGLKLDANVDWYGDRLVW 254
           I NR  + G   D+ VDW  +  VW
Sbjct: 27  IANRFKQMGSHSDSEVDWDNEEEVW 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,159
Number of Sequences: 5004
Number of extensions: 32553
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)