Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   1.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   3.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   6.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   9.0  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 369  LPPVLSKECRKEMQYYKLLAKEVEKRISL 455
            LPP++ K   K  +YY+LL+ ++    SL
Sbjct: 1347 LPPLVKKSLGKSKEYYELLSNKLMNSTSL 1375


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 197  CW*AVTATVENKFFPP*LD*VIQSRS 274
            CW  V + VE K +PP +D ++ +RS
Sbjct: 1110 CWAQVKSAVEEKQYPP-IDLILNTRS 1134


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 367 FYRLSYQKNVAKRCSTTNFWPKKSKSEYHC-FSPI*LKVNRNLAK 498
           FYR   QK  A+  +T +++ K+S+S      SPI    NRN +K
Sbjct: 115 FYRSGSQKR-ARNLTTKDYFAKRSESSSSASVSPISPSANRNDSK 158


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 388 KNVAKRCSTTNFWPKKSKSE 447
           K +AK+ S T+  PKKSK E
Sbjct: 38  KEIAKQSSKTDVSPKKSKKE 57


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 349 FMQDTYCPDCRTDFTSH 299
           ++ +T CPDC   +T H
Sbjct: 141 YVNNTQCPDCARTYTPH 157


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 372 PPVLSKECRKEMQYYKLLAKEVEKRISLLQPY 467
           P   SK C+   +  +L+ KE+ + +S +QP+
Sbjct: 256 PGKTSKPCQVSFKVERLVHKELNEYLSWMQPF 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,849
Number of Sequences: 5004
Number of extensions: 50655
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)