BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_D08 (876 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 240 2e-64 SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 240 2e-64 SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 5e-38 SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 152 5e-38 SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 5e-38 SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 8e-20 SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 3e-05 SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 9e-05 SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 3e-04 SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.50 SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 3.5 >SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|Schizosaccharomyces pombe|chr 1|||Manual Length = 128 Score = 240 bits (587), Expect = 2e-64 Identities = 112/123 (91%), Positives = 116/123 (94%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 271 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 450 IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120 Query: 451 LRP 459 LRP Sbjct: 121 LRP 123 >SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schizosaccharomyces pombe|chr 1|||Manual Length = 128 Score = 240 bits (587), Expect = 2e-64 Identities = 112/123 (91%), Positives = 116/123 (94%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 271 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 450 IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120 Query: 451 LRP 459 LRP Sbjct: 121 LRP 123 >SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schizosaccharomyces pombe|chr 1|||Manual Length = 150 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 >SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||Manual Length = 382 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 137 IQKESTLHLVLRLRGG 152 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 213 IQKESTLHLVLRLRGG 228 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 289 IQKESTLHLVLRLRGG 304 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 365 IQKESTLHLVLRLRGG 380 >SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosaccharomyces pombe|chr 1|||Manual Length = 150 Score = 152 bits (369), Expect = 5e-38 Identities = 73/76 (96%), Positives = 76/76 (100%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60 Query: 271 IQKESTLHLVLRLRGG 318 IQKESTLHLVLRLRGG Sbjct: 61 IQKESTLHLVLRLRGG 76 >SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like protein modifier Ned8|Schizosaccharomyces pombe|chr 2|||Manual Length = 78 Score = 92.3 bits (219), Expect = 8e-20 Identities = 40/77 (51%), Positives = 57/77 (74%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+ Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60 Query: 271 IQKESTLHLVLRLRGGT 321 ++ S LHLVL LRGG+ Sbjct: 61 LEGGSVLHLVLALRGGS 77 >SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pombe|chr 2|||Manual Length = 368 Score = 44.0 bits (99), Expect = 3e-05 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +1 Query: 121 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 297 K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + + Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71 Query: 298 VLRLRGGTIEP 330 V R + T P Sbjct: 72 VSRPKTSTSTP 82 >SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces pombe|chr 1|||Manual Length = 354 Score = 42.3 bits (95), Expect = 9e-05 Identities = 21/73 (28%), Positives = 39/73 (53%) Frame = +1 Query: 91 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 270 + + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63 Query: 271 IQKESTLHLVLRL 309 IQ ++HLV L Sbjct: 64 IQDGHSIHLVKTL 76 >SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosaccharomyces pombe|chr 1|||Manual Length = 467 Score = 40.7 bits (91), Expect = 3e-04 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +1 Query: 118 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 291 GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67 >SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1115 Score = 29.9 bits (64), Expect = 0.50 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 37 LKIWFLFLSKHVFHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG-IPPDQ 210 LK +FL+ + FH I + + KT+T+E++ + + + KI E I PDQ Sbjct: 270 LKCYFLYDQLNKFHDQEVQDIMKQNIDLKTLTMELQRA--VAGYEKKISGLESRIKPDQ 326 >SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces pombe|chr 2|||Manual Length = 603 Score = 27.1 bits (57), Expect = 3.5 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +1 Query: 94 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 267 +I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + + Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64 Query: 268 NIQKESTLHLVLRLRGGT 321 + T HLV+ + T Sbjct: 65 DATDLVTFHLVIAVFNST 82 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,009,131 Number of Sequences: 5004 Number of extensions: 55942 Number of successful extensions: 146 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 140 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 146 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 438479610 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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