BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P01_F_C11 (746 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 29 0.53 SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 29 0.93 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 28 1.6 SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.8 SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.8 SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 5.0 SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.6 SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.6 SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 26 6.6 SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 25 8.7 SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.7 >SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosaccharomyces pombe|chr 2|||Manual Length = 300 Score = 29.5 bits (63), Expect = 0.53 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%) Frame = +1 Query: 406 LTNTERIR----SIQFGEP-LPEDVQAAFDN--VLEYIDDIDTANDFYKMGGFAMFPICY 564 L N+E IR S +P + E+V+AA D V +I + N FY++ G PI + Sbjct: 124 LGNSEHIRCCHNSFARSDPFISEEVRAATDEDEVYHFIAYTNINNVFYELDGLQAAPINH 183 Query: 565 GS--ENEKVRALASTVLAELCQNNP 633 GS + E S + A + +P Sbjct: 184 GSCTKEEFAEKAVSVIQARIANYDP 208 >SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1086 Score = 28.7 bits (61), Expect = 0.93 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 308 NSEXPWCIFSFCGFHCKP*KSLQVSWLP 225 N E P C+ +HCKP L V W+P Sbjct: 666 NVESP-CLMLQHSYHCKPNSKLNVFWMP 692 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +3 Query: 156 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 254 ++TI+ + PT+ ++ V PN P P + Q LL Sbjct: 7 SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39 >SPCC162.08c |nup211||nuclear pore complex associated protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1837 Score = 27.1 bits (57), Expect = 2.8 Identities = 18/79 (22%), Positives = 36/79 (45%) Frame = +1 Query: 199 KMKSYQISRGSQETCKDFYGLQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIA 378 K K Y+ + + + Y Q + + K+ Q N ++DE RK LE+ L + + Sbjct: 44 KSKDYESIKNDRIVTEVNYEQQLRNSEKKLLQSNERYDLLEDE-RKLLENELSQIKEYLR 102 Query: 379 EVLLNAIRILTNTERIRSI 435 E + +L + ++S+ Sbjct: 103 EKSSSYDTVLHDCSSLKSV 121 >SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sfc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1339 Score = 26.6 bits (56), Expect = 3.8 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Frame = +1 Query: 271 PQKLKMHQGNSELGPIDDERRKFLE---DALKSLTVNIAEVLLNAIRILTNTERIRSIQF 441 P ++K H+ +SE P+D E K E D L + E L + NT++ ++ Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855 Query: 442 GEPLPEDVQAAFDNVLEYIDDIDTAN 519 + L +D A+ + +Y + A+ Sbjct: 856 PKKLRKDRYASVEE-FDYFSSTEHAS 880 >SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1465 Score = 26.2 bits (55), Expect = 5.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 497 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 372 +YSR A SSG C+ R+L RIL+ T+++ Sbjct: 1352 LYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASV 1393 >SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 782 Score = 25.8 bits (54), Expect = 6.6 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -1 Query: 224 RLIW*DFILTSCRISQSSGNRVILRIIRTHLLETQIFC--EISLVRNGIRN*AVKPTESR 51 RLIW + + +S S G + +T++ E C +IS N I + + + TE+ Sbjct: 365 RLIWSELLFFDRMLSMSLGRPFAISNDQTNVHEPSNVCDIQISSQSNCIPDPSYERTEAS 424 Query: 50 LVLFKS 33 +FK+ Sbjct: 425 FTIFKA 430 >SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1463 Score = 25.8 bits (54), Expect = 6.6 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 497 IYSRTLSKAACTSSGSGSPNCMLRILSVLVRILMAFSNTSAM 372 +YSR A SSG C+ R L R+L+ T+A+ Sbjct: 1350 LYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAV 1391 >SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pombe|chr 2|||Manual Length = 600 Score = 25.8 bits (54), Expect = 6.6 Identities = 11/41 (26%), Positives = 18/41 (43%) Frame = +2 Query: 422 GFVAYSLGNHYQKTYRRLLTMSLNILTILIQQMTSIRWEGL 544 G +A S GNH Q T+ + ++ Q I+W + Sbjct: 163 GVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNV 203 >SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1040 Score = 25.4 bits (53), Expect = 8.7 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +1 Query: 352 LKSLTVNIAEVLLNAIRILTNTERI---RSIQFGEPLPEDVQAAFD 480 ++++ ++I E+ + IRIL+ ER+ RSI G P V +D Sbjct: 125 MRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYD 170 >SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 1752 Score = 25.4 bits (53), Expect = 8.7 Identities = 10/40 (25%), Positives = 23/40 (57%) Frame = +1 Query: 421 RIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGG 540 R+ +QFG PE++++ +E+ + +D + ++GG Sbjct: 15 RVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGG 54 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,667,073 Number of Sequences: 5004 Number of extensions: 50867 Number of successful extensions: 157 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 355273338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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