Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B22
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   5.1  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    25   8.9  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   8.9  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 RNKRFNRISTCSIREQGY*KNIGTKFSC 276
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 226 SIREQGY*KNIGTKFSCQI*SIPGEIFRTC*HL----FMYDKSIYYVFI 360
           S+ + G+  N G +F CQ  + PG+  R   H     + +D+ I  +F+
Sbjct: 185 SLVDTGFYLNPGLRFGCQFVAYPGDALRYHSHYLVNSYKWDQEIPVLFL 233


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 492 WNVFIDAEVTVFMVKGVHIGTEVAGSSRVFTK 587
           W V IDA+VT   +K V  G  V+ +SR F K
Sbjct: 555 WGVGIDADVTSAGLKAVMSG--VSRASRAFAK 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,429
Number of Sequences: 5004
Number of extensions: 57602
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)