Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0186
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.26 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.2  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   7.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   7.4  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   7.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   9.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   9.8  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   9.8  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -2

Query: 210 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 58
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 165 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 58
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 311 WADNFTLNKLECSKRAKNALEYFVHGIIEYDLGSILLVF 195
           W    T+N L  ++    +L+Y  +G++  D+ SIL V+
Sbjct: 488 WLFCVTVNSL--TQLVLKSLKYDTYGVVARDISSILAVY 524


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 226 NMISVLFCWFSELRGND 176
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 259 FLARFEHSNLFKVKLSAHLDTHRRAPR*DFD 351
           F A  +   L +  LS H+ TH  AP   FD
Sbjct: 143 FEAGIDSPLLCQASLSTHVKTHNNAPLTSFD 173


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 219 SRFYFVGFQNSEVMINRDNWGHSYCDVRGEILGS 118
           S+  F+G  ++   I++D +      +RG ++ S
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSS 898


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 6/20 (30%), Positives = 17/20 (85%)
 Frame = +1

Query: 115 RRSKNFTSNVAIRMPPVIPI 174
           + SK++ +N ++++PP++P+
Sbjct: 558 KTSKSYKTNDSLKVPPLVPL 577


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 201 QQNRTEIIFYYSMHEIFKSIFS 266
           Q N ++I F Y  H I KS+ S
Sbjct: 459 QNNHSQITFPYKRHNIHKSVDS 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,146
Number of Sequences: 5004
Number of extensions: 33257
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)