Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0180
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 1.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 2.9
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.9
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 3.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 3.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 5.0
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 5.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 5.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 5.0
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 25 5.0
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 6.6
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 6.6
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 24 8.7
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 8.7
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 8.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 8.7
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 1.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
P+ P+EG Y + ++ HRI R A LE ++R V+ P
Sbjct: 3 PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -2
Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
STY P L V D N F I+P+Y WN A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 363 FPYLHYSID*RLFTLETCCGYGYEPARHL 277
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 264 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
+P + P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 76 RVFDGVTQSGLKTPPRGPGRV 138
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 5.0
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 12 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 170
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -2
Query: 377 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPDTAANAVLFAF 198
S TSL+ R S+P R D G+++ +TYIPH K ++ +A
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269
Query: 197 RTISPFYRIP 168
R++S Y+ P
Sbjct: 270 RSVSRSYQSP 279
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 76 RVFDGVTQSGLKTPPRGPGRV 138
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 264 SPEFQGPQRVSGHRRKCGALR 202
SPEF G RV+ HR G L+
Sbjct: 60 SPEFSGMSRVARHRLVYGLLK 80
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 128
P+PI P+ ++ P+S TS R P P+D S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 181 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +1
Query: 214 AFAAVSGYSLRTLKFR*GMYVEMSRRFVPISAAGLQG 324
A + G KF GM+ ++P + G+QG
Sbjct: 393 AVPVIKGVKSENEKFAGGMFTTTVEGYIPTTGRGIQG 429
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 136 LFPDLSAASSGHFGLPRRT 80
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 3 KGNPVPIPEPGSGTVSI 53
K NPV I EPG G SI
Sbjct: 202 KNNPVLIGEPGVGKTSI 218
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 8.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 222 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 67
+K + +P HI LL + E + + +++ + SRRR L EH LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,969
Number of Sequences: 5004
Number of extensions: 40050
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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