Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0154
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    27   1.7  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 352  LSEQSLTVFTM*SNIQVSLIT*MNEGVSENPSIRVTFMFYFEPV 221
            +S QSL +      +  SL T + EG+S  PS+  TF  Y  PV
Sbjct: 1365 ISLQSLEIIR---EVYSSLSTMIKEGLSSKPSVNETFSKYVFPV 1405


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 246 VTLIDGFSETPSFIYVINDT*MLLYIVNTVSDCSESTRKYRQL 374
           VTL DGF E P  ++  NDT ++     T  + ++ T + RQL
Sbjct: 466 VTLTDGFPEKPDPLFSNNDTSII-----TTLESTDETGRLRQL 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,249
Number of Sequences: 5004
Number of extensions: 45949
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)