Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20066
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.92 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.7  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    26   4.9  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   6.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.6  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 351 VHKLNRVFGEDKSELNWETIPDDVL 277
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 QLYNSVVVADYDSAVEKSKHLYEEKKS 187
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 266 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 367
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 296 VSQLSSDLSSPKTRLSLCTSATV 364
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 426 QGQDKPESQLEVNRSVGEQQGLLQDLEHERNQYLVLGVGTNW 551
           +G  KP +   +++++  + G L+D + E N  L    G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 489 LLQDLEHERNQYLVLGVGTNWNGDHM 566
           LLQ+L HE   ++V  +G+N N DH+
Sbjct: 450 LLQELSHE---HIVQYLGSNLNSDHL 472


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 366  ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQF 235
            E V  +H L+  F ED+ E   E I  DV  A++PKL   S  +
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKLDITSEDY 2042


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 283 CPWSPGAKVEGVLHAVHLVVSYQFV 209
           CPWS G  ++G+L  + + +S +FV
Sbjct: 52  CPWSIGNLLDGILSVLTIYIS-EFV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,269
Number of Sequences: 5004
Number of extensions: 51588
Number of successful extensions: 235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)