Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20040
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    63   4e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    29   0.78 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   1.8  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   7.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.7  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
 Frame = +2

Query: 239 IICGA-GAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHN--TKG 409
           II G  GAFTP CS + +PGY+ N  +  + G++ I  V+VND +V  AW    +   + 
Sbjct: 31  IIVGVPGAFTPPCS-SQVPGYIANEKQFAAKGISGIYVVAVNDVFVTKAWKKSFDGGEQS 89

Query: 410 KVRMLADPSGNFIKALDLGTNLPP-LGGFRSKRF 508
            V  +AD +G F KA D G +    LG  RSKR+
Sbjct: 90  GVHFVADWNGEFTKAFDAGFDASGLLGPLRSKRY 123


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +2

Query: 227 KEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSD-GVAEIVCVSVNDPYVMAAWGAQHNT 403
           ++ C+I GAGAF   C+      +     K K+  GV       +  P  +AA  +    
Sbjct: 402 EDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQ 461

Query: 404 KGKVRMLADPSGNFIKALDLGTNLP 478
              V +  + S  +   LDL T +P
Sbjct: 462 DAIVALQEEASEGYKVGLDLKTGMP 486


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 334 NSIRFQFICVLYVSRQVCFRTSRGEGAGTANNTTFF 227
           NSI+  F+C++Y+S+ + ++   G         T F
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHGNALDPLEGVTDF 557


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 346 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 257
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 293 GYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQH-----NTKGKVRMLADPS 436
           GY+ +++ L  +G  + +   V++P   A W  +H     N +  + +L D S
Sbjct: 329 GYLHSSELLYPEGTEQQIISLVDEPNQNALWIIEHEHSQDNNRSNIELLKDGS 381


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 563 VPSGSTFRSWTLLSTMTIGTFWSGNLRAAADW 468
           VPS    R +  L ++ + TFW+G + +  D+
Sbjct: 29  VPSPCNLRLYHELISVIVPTFWNGKINSEIDF 60


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 564 SAIGLHIQILDLAVNDDH-RNLLERKPPSGGRLV 466
           S  GL +Q LDL +NDD  ++ +    P+G  LV
Sbjct: 389 SVKGLSLQALDLEINDDFLKSGITCAVPAGENLV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,255
Number of Sequences: 5004
Number of extensions: 61121
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)