Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30107
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.2  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   6.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.9  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   8.9  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 289 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 173
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 206 EFIKRQDQKRSDLDEQLKEY 265
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 261 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 353
           N     A   P    SSN+ K S PS  FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 289 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSGC 170
           PL +  +D + ++F+Q++   VL  +    SL +   SGC
Sbjct: 281 PLLSLSIDFYFRVFVQIKAKPVLVKNLQSQSLLIYHCSGC 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,120
Number of Sequences: 5004
Number of extensions: 17950
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)