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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30075
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   268   7e-73
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   136   4e-33
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   123   3e-29
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...   118   6e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    94   2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    78   1e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    73   4e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    71   2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    43   4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.5  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.6  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   7.9  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   7.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  268 bits (656), Expect = 7e-73
 Identities = 122/138 (88%), Positives = 130/138 (94%)
 Frame = -1

Query: 702 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANT 523
           KSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE  YNSIMKCDVDIRKDLY N 
Sbjct: 238 KSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNV 297

Query: 522 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 343
           VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357

Query: 342 SKEEYDESGPGIVHRKCF 289
           SK+EYDESGPGIV+RKCF
Sbjct: 358 SKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  136 bits (328), Expect = 4e-33
 Identities = 60/137 (43%), Positives = 93/137 (67%)
 Frame = -1

Query: 699 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 520
           +Y+LPD Q IT+G E F  PE LF P  +G E+ G+H  ++ SI+  D+D+R  LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303

Query: 519 MSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 340
           +SGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363

Query: 339 KEEYDESGPGIVHRKCF 289
            EEY ++   ++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  123 bits (296), Expect = 3e-29
 Identities = 61/141 (43%), Positives = 93/141 (65%), Gaps = 12/141 (8%)
 Frame = -1

Query: 702 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANT 523
           ++Y LPDG+VI +G+ER+ CPE LFQP  +G E  G+ E ++++I   DVDIRK LY   
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297

Query: 522 VMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 376
           V+SGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357

Query: 375 AS-LSTFQQMWISKEEYDESG 316
           A  ++    MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score =  118 bits (285), Expect = 6e-28
 Identities = 62/140 (44%), Positives = 81/140 (57%), Gaps = 11/140 (7%)
 Frame = -1

Query: 702 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVD 550
           K +E PDG     G ERFR  E LF PSF    S          G+HE VY SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338

Query: 549 IRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSIL 376
           +R  L  N V++GGT++ PG+++R+Q E+  LA  S I +           +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398

Query: 375 ASLSTFQQMWISKEEYDESG 316
           ASL  FQ +W+SK+EYDE G
Sbjct: 399 ASLDNFQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
 Frame = -1

Query: 597 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 418
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P + ++KI A 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384

Query: 417 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 292
               ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G     ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 43/128 (33%), Positives = 64/128 (50%)
 Frame = -1

Query: 678 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 499
           QV+ + NERF  PE LF PS + +   GI E V  S+     +I+  L  N V  GG   
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331

Query: 498 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDES 319
           +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +    I++ EY E 
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390

Query: 318 GPGIVHRK 295
           G  I+ RK
Sbjct: 391 GANIMTRK 398


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
 Frame = -1

Query: 672 ITIGNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 496
           I +G ERF  PE  F P     +    + E V N +    +D+RK LY N V+SGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339

Query: 495 PGIADRMQKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTF 358
               +R+Q+++  +    I               + +I+   ++ +VW GGS+LA    F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399

Query: 357 QQMWISKEEYDESGPGIVHR 298
                +K +Y+E G  I  R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 32/115 (27%), Positives = 62/115 (53%)
 Frame = -1

Query: 657 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 478
           E+ R PE +F PS +G++  GI E + + + +  ++ ++ L +N +++GG    PG+  R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653

Query: 477 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 313
           +++E+T++ P    I +          W G S  +    F+   +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = -1

Query: 543 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 373
           K+LY++ ++ GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I  
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586

Query: 372 SLSTFQQMWISKEEYDESGPGIVHRK 295
            +    ++WI   ++   G  ++  K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 396 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 295
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 471 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 361
           KEI++ A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 233 ELGRAQHHTAPGSRGRAA*KHLRWT 307
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 592 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 464
           PR+ V      R+R P  P  + R V      PR RRQ  +G+
Sbjct: 41  PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,183
Number of Sequences: 5004
Number of extensions: 46714
Number of successful extensions: 140
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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