Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30060
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   4.8  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   6.4  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   8.5  

>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 18  VTDKEDDCRKDGPSPELENGGDRKGDS 98
           + D EDD   D PSP ++     KG S
Sbjct: 101 IEDTEDDMFADSPSPSVKRQNTGKGIS 127


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/59 (16%), Positives = 28/59 (47%)
 Frame = -2

Query: 365 LTTVLGVMCTF*HVTVAIISVATGTVRMPILVAVILSVLKSFPVRSVLVITTLSAPIAV 189
           L++  G    F H++   + +      +P++   +    + FP    L++T ++A +++
Sbjct: 89  LSSYFGYASMF-HLSYPTVILGKSCKLLPVIALHVFVYKRKFPPHKYLIVTMITAGVSI 146


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 252 FEILPCSICFGNHHLVGPDSRH 187
           F++L C    G HHL GP+  H
Sbjct: 8   FQVL-CLATIGFHHLRGPEIEH 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,479
Number of Sequences: 5004
Number of extensions: 21433
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)