Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30059X
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   160   9e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    75   7e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    74   1e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    72   5e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    56   4e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    44   9e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    44   9e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    44   1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    36   0.003
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.84 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   1.5  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   4.5  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   5.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   5.9  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  160 bits (389), Expect = 9e-41
 Identities = 72/80 (90%), Positives = 78/80 (97%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQM 355

Query: 297 WISKEEYDESGPGIVHRKCF 238
           WISK+EYDESGPGIV+RKCF
Sbjct: 356 WISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 34/80 (42%), Positives = 55/80 (68%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           N V+SGG+T+  G  +R   E+ A++    ++KI A PER ++ W+GGSILASLSTF+++
Sbjct: 301 NIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRL 360

Query: 297 WISKEEYDESGPGIVHRKCF 238
            I+ EEY ++   ++ R+ F
Sbjct: 361 LITSEEY-KNDQNVIFRRRF 379


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTF 307
           N ++ GGT++  G + R+Q E++ L P + ++KI A     ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407

Query: 306 QQMWISKEEYDESGP---GIVHRKC 241
            Q+WIS++EY+E G     ++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 71.7 bits (168), Expect = 5e-14
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQ 304
           N V++GGT++ PG+++R+Q E+  LA  S I +           +VW GGSILASL  FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405

Query: 303 QMWISKEEYDESG 265
            +W+SK+EYDE G
Sbjct: 406 HLWVSKQEYDEVG 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
 Frame = -3

Query: 471 VMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 325
           V+SGG++MY G+  R++KEI  L         P+ +   K+KI   P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357

Query: 324 AS-LSTFQQMWISKEEYDESG 265
           A  ++    MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           N V  GG   +PG   R+  E+ +LAP+  ++K+  P +     W   S +  L  +   
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380

Query: 297 WISKEEYDESGPGIVHRK 244
            I++ EY E G  I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 298
           N +++GG    PG+  R+++E+T++ P    I +          W G S  +    F+  
Sbjct: 637 NVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAA 696

Query: 297 WISKEEYDESGP 262
            +++EEY E GP
Sbjct: 697 KVTREEYLEKGP 708


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
 Frame = -3

Query: 477 NTVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKYSVWI 340
           N V+SGG+T++    +R+Q+++  +    I               + +I+   ++ +VW 
Sbjct: 329 NIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWF 388

Query: 339 GGSILASLSTFQQMWISKEEYDESGPGIVHR 247
           GGS+LA    F     +K +Y+E G  I  R
Sbjct: 389 GGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -3

Query: 462 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 292
           GG   +PG A  +++ I +   +   I +I PP   + ++  W G  I   +    ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596

Query: 291 SKEEYDESGPGIVHRK 244
              ++   G  ++  K
Sbjct: 597 KNSDWKMLGSRVLQYK 612


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 345 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 244
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 420 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 310
           KEI++ A S I +  + P E+    W    ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 182 ELGRAQHHTAPGSRGRAA*KHLRWT 256
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 394 DHQDQDHRSPREEVLRMDRWIHPG 323
           D  D+  R+  E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 191 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 24
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 353 YFLSGGAMILILMVEGARAVISFCILSAIPGY 448
           Y +SGGA +        +A +S CI   +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,463
Number of Sequences: 5004
Number of extensions: 29668
Number of successful extensions: 78
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)