Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30052X
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.0  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   4.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    24   7.2  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  KYIVYLLQK*QYIHYNL*L*LRKG--EESRLTASLAERGEILAVVDLRRRHVVTLY 200
           +Y+  L+QK + I   L    RK   +E R+T   +E   +++ +D  +RH   L+
Sbjct: 122 EYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVLISRIDRTKRHFSELF 177


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 174 EGRRQQGFPLSQLDSQ*V*ILLPFEARVTNYNVCTVIFEVNIQYIYKS 31
           E ++Q+  P S + S    I + +E R+ NY +     E  IQY YKS
Sbjct: 212 ESQKQRIKPWSGIASM---IQIDYEKRLQNYPIWKACIEERIQY-YKS 255


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 188 HVTPPKVDDSKDFPSL 141
           H T P +DDS+ FP +
Sbjct: 252 HFTSPHIDDSQHFPPM 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,305
Number of Sequences: 5004
Number of extensions: 15845
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)