Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30044X
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 3e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 2e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 95 8e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 79 3e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 61 1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 8e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 3e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.9
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.8
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 7.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (509), Expect = 3e-55
Identities = 94/109 (86%), Positives = 102/109 (93%)
Frame = -1
Query: 564 LGMESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIK 385
LG+E+ GIHE NSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K
Sbjct: 267 LGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMK 326
Query: 384 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 238
+KI+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 327 VKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 100 bits (239), Expect = 2e-22
Identities = 45/109 (41%), Positives = 74/109 (67%)
Frame = -1
Query: 564 LGMESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIK 385
+G E+ G+H + SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ +
Sbjct: 272 MGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQ 331
Query: 384 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 238
+KI A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 332 VKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 94.7 bits (225), Expect = 8e-21
Identities = 45/98 (45%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Frame = -1
Query: 552 SCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAP-STIKIKI 376
S G+HE V SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I +
Sbjct: 321 SVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHT 380
Query: 375 I-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 265
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 381 AETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 1e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -1
Query: 546 GIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 367
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 366 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 241
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 79.4 bits (187), Expect = 3e-16
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 12/112 (10%)
Frame = -1
Query: 564 LGMESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITAL------ 403
+G E G+ E + ++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 267 VGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVL 326
Query: 402 --APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 265
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 327 HGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -1
Query: 537 ETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTI---------- 388
E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 387 ----KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 247
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 8e-09
Identities = 25/101 (24%), Positives = 53/101 (52%)
Frame = -1
Query: 564 LGMESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIK 385
+G++ GI E + + + + ++ ++ L +N +++GG PG+ R+++E+T++ P
Sbjct: 608 VGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSS 667
Query: 384 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 262
I + W G S + F+ +++EEY E GP
Sbjct: 668 INVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.8 bits (121), Expect = 3e-08
Identities = 31/105 (29%), Positives = 49/105 (46%)
Frame = -1
Query: 558 MESCGIHETVXNSIMKCDVDIRKDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIKIK 379
+ GI E V S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K
Sbjct: 295 IREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVK 354
Query: 378 IIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 244
+ P + W S + L + I++ EY E G I+ RK
Sbjct: 355 VFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 492 KDLYANAVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 322
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 321 SLSTFQQMWISKEEYDESGPGIVHRK 244
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 345 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 244
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 420 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 310
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 182 ELGRAQHHTAPGSRGRAA*KHLRWT 256
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 394 DHQDQDHRSPREEVLRMDRWIHPG 323
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 191 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 24
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,026
Number of Sequences: 5004
Number of extensions: 34735
Number of successful extensions: 92
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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